Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002424.1:353944-355610[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.031 1.6 9.6 3.2 1 23 95 117 95 117 0.97

2 15 0.54 28 5.6 1.5 1 20 119 138 119 140 0.93

3 15 0.52 27 5.7 8.5 1 23 161 183 161 183 0.98

4 15 0.00074 0.038 14.6 3.7 2 23 190 212 189 212 0.95

5 15 0.0095 0.48 11.2 5.7 1 23 218 240 218 240 0.98

6 15 0.0012 0.063 13.9 4.1 1 23 246 269 246 269 0.96

7 15 8.9e-05 0.0045 17.5 6.9 1 23 275 297 275 297 0.98

8 15 0.00013 0.0066 17.0 5.6 1 23 303 325 303 325 0.98

9 15 0.0023 0.12 13.1 5.4 1 23 331 353 331 353 0.98

10 15 0.36 19 6.2 2.6 1 23 359 382 359 382 0.93

11 15 0.00051 0.026 15.2 5.2 1 23 388 410 388 410 0.98

12 15 0.0075 0.38 11.5 5.2 3 23 418 438 416 438 0.98

13 15 0.00021 0.011 16.4 4.4 1 23 444 466 444 466 0.98

14 15 0.0026 0.13 12.9 4.7 1 23 472 495 472 495 0.97

15 15 0.00043 0.022 15.4 6.5 1 23 501 523 501 523 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.031	1.6	9.6	3.2	1	23	95	117	95	117	0.97
2	15	0.54	28	5.6	1.5	1	20	119	138	119	140	0.93
3	15	0.52	27	5.7	8.5	1	23	161	183	161	183	0.98
4	15	0.00074	0.038	14.6	3.7	2	23	190	212	189	212	0.95
5	15	0.0095	0.48	11.2	5.7	1	23	218	240	218	240	0.98
6	15	0.0012	0.063	13.9	4.1	1	23	246	269	246	269	0.96
7	15	8.9e-05	0.0045	17.5	6.9	1	23	275	297	275	297	0.98
8	15	0.00013	0.0066	17.0	5.6	1	23	303	325	303	325	0.98
9	15	0.0023	0.12	13.1	5.4	1	23	331	353	331	353	0.98
10	15	0.36	19	6.2	2.6	1	23	359	382	359	382	0.93
11	15	0.00051	0.026	15.2	5.2	1	23	388	410	388	410	0.98
12	15	0.0075	0.38	11.5	5.2	3	23	418	438	416	438	0.98
13	15	0.00021	0.011	16.4	4.4	1	23	444	466	444	466	0.98
14	15	0.0026	0.13	12.9	4.7	1	23	472	495	472	495	0.97
15	15	0.00043	0.022	15.4	6.5	1	23	501	523	501	523	0.99

Sequence Information

Coding Sequence: ATGGCAGGAACCACAATATCttgtgaaatttgtttaaaagaaataagggAAGGAACCCTAAACAACGACCTTAAGTTGTCGAGCTTTCCTATAAAAACAGATTTGAGCATCGAAGAAAATCCACTTACGTGCAACGAATGCAGGATCAAAATCGATgaagaaactgaaaatattgttaaaaacgaGTTTGTGGAAGTTgctgttaaaaatgaaaatacgatTAAGGAAGAATATGTGTTATTTAACGTGGATATGCCTATCTGCATGGAAGAATCTGCATCGTACTACTGCCACCAATGCGATTACACTACTAGCGATAAACGAATATTAACCGATCACGTATTTACCCACTTGTTTAAATGCGATCTGTGCAGTTACACTACGTTTGATCATTACTCCGTACAGCAACACAAAGAAGTacaatgtaatattaaaaatgctttatcTTGGCACAATAAAATACGCACtcaagaaaaactgtttaagtGTACTTTTTGTGATCATTGTAGCTTGCGTGCAGCCCACCTGAAAACgcacatgtacaaacattctggGGAGAAACCGTTGAGCTGTGACGAGTGCGATTACCGGTGTTACAGCAAAAGTAATTTGTTTCAGCACAATAGAAGAATGCACTctcaagaaaaaccgtttaaatgtgatttttgcGATTATTGCAGCAGTGTATCCATCGATCTGAAAAAACATTTGCACAAACATTTTGAGGAAGAACCTTTCAGCTGTGATGAGTGCGACTACAGGTGTTACAGTAGAAGTGATTTATCTCGGCATAACAAAAGAATGCACAAtcaagaaaaactgtttaaatgtaatgtttgcaattattgttgtaatcgagtatcaaatttgaaaaagcatATGTATATACATTCCGGAGAGAAACCTTTCAGCTGTGATAAGTGCGATTACAAATCTCGTGATAAAAGTCATTTAACTCGCCATAATAGAAGACACACTCAAGAAAAACCGTTCAGATgcaatttttgtgattattgcgcCAGTGAAGCAAGCTCATTGAAAACGCACATGCACAAACATTCGGAGGAGAAACTTTTCAGCTGCATTCAGTGCGACTACAGGTGTTACAGCAAAAGTGAATTATCTGGGCATAATAGAAGAATTCACACTCAAGAGAAACcgtttaagtgtaatttttgtgattattgcagcaATGAATCGGGCAACCTGAAAAAGCACATGTACAAACATGCCGGTGAGAAACCTTTCGGttgtgataagtgcgactacaagTGTTACAGCAAAAGTCTTTTATCTCAGCACCATAGAATACACACTCATGAAAAGccgtttaaatgcaatttgtgtGATTATTGCAGCAGTTTATCCGGCAACCTAAAAAAgcacatgtacaaacattctggAAAGAAACTTTTCAGctgtgataagtgcgactacagGTGTTACAGCAAAACTGAATTGTCTCGTCATAATAGAAGAATACACactcaagaaaaaccgtttaagtgTAATCTTTGTGACTATTGCAGCAATGAATCCGGCAACCTAAAAAAGCACATGTGCAAACATTCTGGGCAGAAAAATTTTCAGCTGCAAAAAAGTGTCTCGGCACAATAG
Protein Sequence: MAGTTISCEICLKEIREGTLNNDLKLSSFPIKTDLSIEENPLTCNECRIKIDEETENIVKNEFVEVAVKNENTIKEEYVLFNVDMPICMEESASYYCHQCDYTTSDKRILTDHVFTHLFKCDLCSYTTFDHYSVQQHKEVQCNIKNALSWHNKIRTQEKLFKCTFCDHCSLRAAHLKTHMYKHSGEKPLSCDECDYRCYSKSNLFQHNRRMHSQEKPFKCDFCDYCSSVSIDLKKHLHKHFEEEPFSCDECDYRCYSRSDLSRHNKRMHNQEKLFKCNVCNYCCNRVSNLKKHMYIHSGEKPFSCDKCDYKSRDKSHLTRHNRRHTQEKPFRCNFCDYCASEASSLKTHMHKHSEEKLFSCIQCDYRCYSKSELSGHNRRIHTQEKPFKCNFCDYCSNESGNLKKHMYKHAGEKPFGCDKCDYKCYSKSLLSQHHRIHTHEKPFKCNLCDYCSSLSGNLKKHMYKHSGKKLFSCDKCDYRCYSKTELSRHNRRIHTQEKPFKCNLCDYCSNESGNLKKHMCKHSGQKNFQLQKSVSAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -