Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002810.1:43735-45466[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0015 0.075 13.7 2.6 2 23 90 111 89 111 0.96

2 16 4.2 2.1e+02 2.8 0.6 3 23 158 178 156 178 0.85

3 16 0.00062 0.031 14.9 6.5 1 23 184 206 184 206 0.98

4 16 0.0014 0.071 13.8 3.1 1 23 212 234 212 234 0.98

5 16 0.69 35 5.3 6.4 1 23 240 262 240 262 0.98

6 16 0.0042 0.21 12.3 2.1 1 23 268 290 268 290 0.97

7 16 0.00042 0.021 15.4 6.3 1 23 296 318 296 318 0.98

8 16 0.014 0.72 10.6 7.0 1 23 324 346 324 346 0.98

9 16 0.013 0.68 10.7 4.2 1 23 352 374 352 374 0.98

10 16 0.0016 0.08 13.6 3.9 1 23 380 402 380 402 0.97

11 16 9.4e-05 0.0048 17.5 5.2 1 23 408 430 408 430 0.98

12 16 0.007 0.36 11.6 0.5 3 23 437 457 435 457 0.97

13 16 0.0024 0.12 13.0 6.4 1 23 462 484 462 484 0.98

14 16 3.1 1.6e+02 3.3 0.2 1 11 490 500 490 506 0.83

15 16 0.023 1.2 10.0 5.5 2 23 508 529 507 529 0.98

16 16 0.0077 0.39 11.4 5.2 1 23 535 557 535 557 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0015	0.075	13.7	2.6	2	23	90	111	89	111	0.96
2	16	4.2	2.1e+02	2.8	0.6	3	23	158	178	156	178	0.85
3	16	0.00062	0.031	14.9	6.5	1	23	184	206	184	206	0.98
4	16	0.0014	0.071	13.8	3.1	1	23	212	234	212	234	0.98
5	16	0.69	35	5.3	6.4	1	23	240	262	240	262	0.98
6	16	0.0042	0.21	12.3	2.1	1	23	268	290	268	290	0.97
7	16	0.00042	0.021	15.4	6.3	1	23	296	318	296	318	0.98
8	16	0.014	0.72	10.6	7.0	1	23	324	346	324	346	0.98
9	16	0.013	0.68	10.7	4.2	1	23	352	374	352	374	0.98
10	16	0.0016	0.08	13.6	3.9	1	23	380	402	380	402	0.97
11	16	9.4e-05	0.0048	17.5	5.2	1	23	408	430	408	430	0.98
12	16	0.007	0.36	11.6	0.5	3	23	437	457	435	457	0.97
13	16	0.0024	0.12	13.0	6.4	1	23	462	484	462	484	0.98
14	16	3.1	1.6e+02	3.3	0.2	1	11	490	500	490	506	0.83
15	16	0.023	1.2	10.0	5.5	2	23	508	529	507	529	0.98
16	16	0.0077	0.39	11.4	5.2	1	23	535	557	535	557	0.99

Sequence Information

Coding Sequence: atgatgTCTGAAATTACAACAACAACGAGCAAAATTAAGCAAGATCCAGACGATTATTTAAAGTTGCCTTCGGAACAAGATGTGAGCATCACCGACAACCGAACAGCATGTAACGAGGAGGCCTACGATGTACCCGAATCTTTCGTTAAAGAAGAAATCGAACTCGAGCTTTTCGAATACGTAATTAAGAATGAGGAAAACGTTGAAGACGATCGCATATTATTTAACACCGACGATATCGAAGAAAGTAAATCGGTAagaatattgtattgttatcATTGTAATTACGGCactaaagataaaaacaatttaaccgAACACATTTTCACTCACCGCATTAAATGCCCGGATAATTTGAGTCACGAACAAATTTGCACAAAGCTCGGATCTTCGCAATGTAATTGTATAGAGAAACAATCTCTAGATGAGGATGAAAAACGCCACACAATGTGCAGCAGTAATTCCATCATTTGCAACACGTTCGACtgcaaaactaatttcaaatcaACATTGGTGATGCACGAAAAAATTCACTCggaagaaaaaccatttaaatgcacCAAGTGCGATTACAGCAGTAAATATTCGCACACCTTAAAAAAGCACTTATTGAAACATTCCGACTTCCATCCTTTCGAGTGTGAtaagtgcgattacaaaacCAAATTCAAATTCAGTTTGGCGAGGCACAAAAAAATTCACTCAAACAAAAAACCATTTCGATGCGATATGTGTAATTTCTGCAGTAAATATTCGCACATCTTAAAAATGCACATGATAAAACATTCCCTCAAACAAACTTTCAATTGcgataagtgcgactacaaaactaatttcaaatcGACTTTGATGATGCACGAAAAAATTCACTCGGAAGAAAAACCATTCAAATGCACCAAGTGCGATTACAGCAGTAAATATTCGCACACCTTAAAAAGGCACTTGTTGAAACATTCCGACCTCCATCCTTTCAAGTGTGATAAGTGCCATTACAAAACCAAATTCAAATTCAGTTTGGCGAGGCACAAAAAAATTCACTCAAACGAAAAACCATTTCGATGCGATATCTGTAATTACTGCAGTAAATATTCGTACATCTTAAAAACGCACATGATAAAACATTCCGGCGAACCATCTTTCAACTGCGAtaagtgcgattacaaaacttatTACAAATCCCATCTGGCTGACCACAAAAGAATTCACTCGAATGAAAAACCATTTCGATGCAGCGTGTGTAATTTTTgcagtaaaaatcaaaaaaatttgaaaatacacaTGATGAAACATTCCGGTGAACTTTTCGGCTGCGCCAAGTGTTCTTACAAAACAACCTACAAATCTAGTTTGGCGAGCCACCAAATAGTGCACAccgaaaaaacatttaaatgcaatttgtgcAATTTCTGTAGTAAATATTCGAGAAATTTGAAACTGCACATGTCGAAACATTCCGGCGAAGGTCCTTTCGAATGCGAcaagtgcgattacaaaactcGTTTCGAATTATTGTTGGCGAAAAAATGTCACGTGTGCAATTTCTTCAGTAAGTATCCGCGAACCATGAAAAGGCACATGATGAAACATTCCGGCGAACAATCGTTCAAGtgtgacaagtgcgactacaaaggTCGTTATAAATTCTGTTTGGTGAGGCATCAAAAAATTCACtcgaatgaaaaataa
Protein Sequence: MMSEITTTTSKIKQDPDDYLKLPSEQDVSITDNRTACNEEAYDVPESFVKEEIELELFEYVIKNEENVEDDRILFNTDDIEESKSVRILYCYHCNYGTKDKNNLTEHIFTHRIKCPDNLSHEQICTKLGSSQCNCIEKQSLDEDEKRHTMCSSNSIICNTFDCKTNFKSTLVMHEKIHSEEKPFKCTKCDYSSKYSHTLKKHLLKHSDFHPFECDKCDYKTKFKFSLARHKKIHSNKKPFRCDMCNFCSKYSHILKMHMIKHSLKQTFNCDKCDYKTNFKSTLMMHEKIHSEEKPFKCTKCDYSSKYSHTLKRHLLKHSDLHPFKCDKCHYKTKFKFSLARHKKIHSNEKPFRCDICNYCSKYSYILKTHMIKHSGEPSFNCDKCDYKTYYKSHLADHKRIHSNEKPFRCSVCNFCSKNQKNLKIHMMKHSGELFGCAKCSYKTTYKSSLASHQIVHTEKTFKCNLCNFCSKYSRNLKLHMSKHSGEGPFECDKCDYKTRFELLLAKKCHVCNFFSKYPRTMKRHMMKHSGEQSFKCDKCDYKGRYKFCLVRHQKIHSNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -