Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002826.1:12752-14205[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0054 0.28 11.9 2.1 1 23 117 139 117 139 0.98

2 13 4.6 2.4e+02 2.7 1.6 6 20 141 155 140 157 0.88

3 13 0.00011 0.0054 17.3 3.7 1 23 162 184 162 184 0.98

4 13 0.036 1.8 9.4 10.2 1 23 190 212 190 212 0.97

5 13 7.5e-06 0.00038 20.9 3.8 1 23 218 240 218 240 0.99

6 13 0.00027 0.014 16.0 3.7 1 23 246 268 246 268 0.98

7 13 1.9e-05 0.00097 19.7 3.0 1 23 274 296 274 296 0.99

8 13 0.014 0.69 10.7 4.9 1 23 302 324 302 324 0.97

9 13 0.00096 0.049 14.3 5.4 2 23 331 352 330 352 0.96

10 13 0.0037 0.19 12.4 3.9 1 23 358 380 358 380 0.98

11 13 0.00054 0.027 15.1 5.4 1 23 386 408 386 408 0.98

12 13 0.0019 0.097 13.4 6.7 1 23 414 436 414 436 0.98

13 13 0.0014 0.07 13.8 3.3 1 23 442 464 442 464 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0054	0.28	11.9	2.1	1	23	117	139	117	139	0.98
2	13	4.6	2.4e+02	2.7	1.6	6	20	141	155	140	157	0.88
3	13	0.00011	0.0054	17.3	3.7	1	23	162	184	162	184	0.98
4	13	0.036	1.8	9.4	10.2	1	23	190	212	190	212	0.97
5	13	7.5e-06	0.00038	20.9	3.8	1	23	218	240	218	240	0.99
6	13	0.00027	0.014	16.0	3.7	1	23	246	268	246	268	0.98
7	13	1.9e-05	0.00097	19.7	3.0	1	23	274	296	274	296	0.99
8	13	0.014	0.69	10.7	4.9	1	23	302	324	302	324	0.97
9	13	0.00096	0.049	14.3	5.4	2	23	331	352	330	352	0.96
10	13	0.0037	0.19	12.4	3.9	1	23	358	380	358	380	0.98
11	13	0.00054	0.027	15.1	5.4	1	23	386	408	386	408	0.98
12	13	0.0019	0.097	13.4	6.7	1	23	414	436	414	436	0.98
13	13	0.0014	0.07	13.8	3.3	1	23	442	464	442	464	0.98

Sequence Information

Coding Sequence: ATGGCACAAACAACAATATATTGTcagatttgtttaaaagaaataagggATGGAACGCGACTTCCTACCCTAAGCATCAACCTTATAAAAACAGATTTGACTATCGATGAAGATCCGTTTGCCTGTAACgaatgcaaaatcaaaattgatgaaGAATACGAAGCCTTTAtgcaaaatgaaaacattttaaaatacgaaaaacaaTCCCCTTCAATTAATAATGAAGACAaacgtttagaaaaaatcaaagatgAAGCAGTTCCGGTCAAAAATGAAAAGATTGTTAAAAACGAATACGTGTTATTTAACACAATCGGCACGGATGAATGTATATCGTCAGATATTTTGTACTACTGTTACCAATGTAATTATGCTACTAGcggtaaacaaaaattgactaaTCACATATTTACTCACCAGTGCAGTTACACTACGTTTGATAATTCGCACTTGAAAATGCATAAACATTCTCGAGAGAAAACGTTCATATGCGATAAATGCGACTACAGATGCAGCGTCAAAAGTAGTTTGGATCGACACACAAGGACTCACACCCAAGAAAAACCGTTTCACTGCAATGTTTGCGATTTTTGCTGTAGTCACGATGGAAACTTGAAGACGCACATGTATAGACATTCCGGAGAGAAACCCTTCACATGCGATAAGTGCGACTACACGTGCAGCGTCAAAAGTAGTTTGAATAGACACGCAAGGACTCACACTCgagaaaaaccgtttaagtgTAATGTTTGCGATTATCGCTGTAGTCAAGTTGTTAGCTTGAAGACGCACATGTATAGACATTCGGGAGAGAAACCGTTCACATGCGATAAGTGCGACTACAGATGCAGCGTCAAAAGTAGTTTGGCTCGACACGCAAGGACTCACactcaagaaaaaccgtttaagtgCAATGTTTGTGTGTACTGCTGTAGTCAAATTGGTAGTTTGAAGATGCATATGTACCAGCATTCTGGAGAGAAGCCTTTGAGTTGTGATAAATGTAACTACAGGTGTCGACAGAAAAGTTCTTTGGTTAAACACAACAGAAAGCACACCCAAGAAAACGTCTTTCAATGTACTTTCTGCGAATATTGTAGTAACGAAGCTGTCCAATTAAAAAGgcacatgtacaaacattctgAAAAGATGCGTTTCGTttgtgataagtgcgactatAGATGTCGCAACAAAAGTACTTTTTCTCGGCACAATAGAATTCACACTCGAGAGAAACCGTTCGAGTGtagtttttgtgattattgtagTAGTCAAGTGTCACATTTAAAAAGGCACTTGTATAAACACTCCAGTGAGAAACCTTTCAGATGCGATAAGTGCGACTATAGTTGTTACAATAAAAGTGATTTGATACCACACAATAGAACGCACGCAAAAACGGTTTAA
Protein Sequence: MAQTTIYCQICLKEIRDGTRLPTLSINLIKTDLTIDEDPFACNECKIKIDEEYEAFMQNENILKYEKQSPSINNEDKRLEKIKDEAVPVKNEKIVKNEYVLFNTIGTDECISSDILYYCYQCNYATSGKQKLTNHIFTHQCSYTTFDNSHLKMHKHSREKTFICDKCDYRCSVKSSLDRHTRTHTQEKPFHCNVCDFCCSHDGNLKTHMYRHSGEKPFTCDKCDYTCSVKSSLNRHARTHTREKPFKCNVCDYRCSQVVSLKTHMYRHSGEKPFTCDKCDYRCSVKSSLARHARTHTQEKPFKCNVCVYCCSQIGSLKMHMYQHSGEKPLSCDKCNYRCRQKSSLVKHNRKHTQENVFQCTFCEYCSNEAVQLKRHMYKHSEKMRFVCDKCDYRCRNKSTFSRHNRIHTREKPFECSFCDYCSSQVSHLKRHLYKHSSEKPFRCDKCDYSCYNKSDLIPHNRTHAKTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -