Ater010933.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002424.1:384864-387111[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00056 0.028 15.0 2.2 1 23 116 138 116 138 0.98 2 19 0.0022 0.11 13.2 1.4 1 23 140 162 140 162 0.98 3 19 0.00085 0.043 14.5 2.9 1 23 180 202 180 202 0.98 4 19 0.0083 0.42 11.3 5.4 3 23 210 231 208 231 0.97 5 19 0.0076 0.39 11.5 8.8 1 23 237 259 237 259 0.98 6 19 0.032 1.6 9.5 6.1 1 23 265 287 265 287 0.98 7 19 0.00056 0.029 15.0 5.3 1 23 293 315 293 315 0.97 8 19 0.00095 0.048 14.3 2.6 1 23 321 344 321 344 0.93 9 19 0.00024 0.012 16.2 7.8 1 23 350 372 350 372 0.98 10 19 0.002 0.1 13.3 3.5 1 23 404 427 404 427 0.93 11 19 0.066 3.4 8.5 8.8 1 23 433 455 433 455 0.97 12 19 0.00095 0.048 14.3 2.6 1 23 461 484 461 484 0.93 13 19 0.0059 0.3 11.8 8.9 1 23 490 512 490 512 0.98 14 19 0.00095 0.048 14.3 2.6 1 23 518 541 518 541 0.93 15 19 0.0059 0.3 11.8 8.9 1 23 547 569 547 569 0.98 16 19 0.023 1.2 9.9 5.6 3 23 577 597 575 597 0.97 17 19 0.0059 0.3 11.8 8.9 1 23 603 625 603 625 0.98 18 19 0.02 1 10.1 4.9 3 23 633 653 631 653 0.97 19 19 0.0052 0.27 12.0 3.2 1 23 659 681 659 681 0.98
Sequence Information
- Coding Sequence
- ATGGCACAAACCACAATATcctgtcaaatttgtttaaaagaaataagggAAGGAATCTTAAACAACGACCCTAAATTTACGAGCTTTCCCATAAAAACTGAATTGACGTTTGATGAAAATCCACTTGCTTGCGACGAATGCAAGAACAAAATTGATGAAGAACATCAAAGCTTTATGcataacgaaaatattttaaaaactgaaaatctaTCACAATCTGTTTCGACAAACTTCtcttcggaaaaaaatttcgtaaaaactaTCAAAGATGAGTCTGTCGAAGTTacagttaaaaatgaaaatacggTAACGGAAGAATATATGTTATTTAACAAGGATATGTCGTACTATTGTCAACAATGTAATTACGCTACCagcgataaacaaaaattaaccaatCACATATTTACTCATCAATACGAATGTAAACTGTGCAGCTACTCTACGTTCAATCAATCGTCATTAGATGAACATAGAAAAGTACACAGCAGTTGTACTCAATCTCGGCACAATAGAATACGTactaaagaaaaactgtttaaatgtaatgtttgtGATTATTGTAGCTGGCGTGCAGACAACTTAAAAACGCACATGTTCACACATTCCGAAGAGAAACCTTTCGGCTGCAACGAATGCGACTACAGGTGCCATAGAAAAAGTGATTTATCACGACACAATCGAAGAATACACACACAAGAAAAACCATTTcgatgtaatttttgtgattattgcacCAGTGAATCGTGCAACCTGAAAAAGCACATGTACAAACATACTGGGGATAAACCTTTCAGCTGCGACAGGTGCGACTACAAATGCTGCAACAAAAGGGATTTATCCGTGCACAATAGGATACACactcaagaaaaaccgtttCAATGTAATTTCTGCGACTATTGCAGCAGTACATCCGGTAACCTGAAAAAGCACTCGTACACGCATTCTGGTGAGAAACCTTTCAGCTGCGACGAATGCGATTACAGGTGCTACAGCAAAAGTGATTTATCTCGACACAATATAAGAATACACAgtcaagaaaaaccgtttaagtgtaatttttgtgattattgttgCAGTGTATCGAGCAACCTGAAAAGGCATATATACAAACATTCTGGTGTGAAACCTTTCGGCtgtgacaagtgcgactacagTGAATCGTGCAACCTGAAAAAGCACTCGTACACGCATTCTGGTGAGAAACCTTTCAGCTGCGATAAGTGCGATTACAGGTGCTACAGCAAAAGTGATTTATCTCGACACAATATAAGAATACACAgtcaagaaaaaccgtttaagtgtaatttttgtgattattgcacCAGTGAATCGTGCAACCTGAAAAAGCACTCGTACACGCATTCTGGTGAGAAACCTTTCAGCTGCGACGAATGCGATTACAGGTGCTACAGCAAAAGTGATTTATCTCGACACAATATAAGAATACACAgtcaagaaaaaccgtttaagtgtaatttttgtgattattgcacCAGTGAATCGTGCAACCTGAAAAAgcacatgtacaaacattctggAGAGAAACCTTTCAGCTGCGACGAATGCGATTACAGGTGCTACAGCAAAAGTGATTTATCTCGACACAATATAAGAATACACAgtcaagaaaaaccgtttaagtgtaatttttgtgattattgcacCAGTGAATCGTGCAACCTGAAAAAgcacatgtacaaacattctggAGAGAAACCTTTCGGCTGTGATAAATGCGACTACAGGTGTTGCaataaaagtgatttatctcagcacaataaaatacacactaaagaaaaaccgtttaaatgtaatttttgtgattattgcacCAGTGAATCGTGCAACCTGAAAAAgcacatgtacaaacattctggAGAGAAACCTTTCGGCTGTGATATGTGTGACTACAGGTGTTGCaataaaagtgatttatctCAGCACAATAAAATACACACCGAAGAAAagccgtttaaatgtaatttttgtgattattgcagcgGTGTATCCGGCGACCTGAAGAGACATCTGTACAAACATTCTGGAGAGAAACCTTTCGGCTGTGATATGTGTGACTACAGGTGTTGTTTACAAAAGTGA
- Protein Sequence
- MAQTTISCQICLKEIREGILNNDPKFTSFPIKTELTFDENPLACDECKNKIDEEHQSFMHNENILKTENLSQSVSTNFSSEKNFVKTIKDESVEVTVKNENTVTEEYMLFNKDMSYYCQQCNYATSDKQKLTNHIFTHQYECKLCSYSTFNQSSLDEHRKVHSSCTQSRHNRIRTKEKLFKCNVCDYCSWRADNLKTHMFTHSEEKPFGCNECDYRCHRKSDLSRHNRRIHTQEKPFRCNFCDYCTSESCNLKKHMYKHTGDKPFSCDRCDYKCCNKRDLSVHNRIHTQEKPFQCNFCDYCSSTSGNLKKHSYTHSGEKPFSCDECDYRCYSKSDLSRHNIRIHSQEKPFKCNFCDYCCSVSSNLKRHIYKHSGVKPFGCDKCDYSESCNLKKHSYTHSGEKPFSCDKCDYRCYSKSDLSRHNIRIHSQEKPFKCNFCDYCTSESCNLKKHSYTHSGEKPFSCDECDYRCYSKSDLSRHNIRIHSQEKPFKCNFCDYCTSESCNLKKHMYKHSGEKPFSCDECDYRCYSKSDLSRHNIRIHSQEKPFKCNFCDYCTSESCNLKKHMYKHSGEKPFGCDKCDYRCCNKSDLSQHNKIHTKEKPFKCNFCDYCTSESCNLKKHMYKHSGEKPFGCDMCDYRCCNKSDLSQHNKIHTEEKPFKCNFCDYCSGVSGDLKRHLYKHSGEKPFGCDMCDYRCCLQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -