Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002461.1:322445-324040[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00013 0.0069 17.0 2.0 1 23 105 127 105 127 0.98

2 13 1.1e-05 0.00054 20.4 1.8 1 23 165 187 165 187 0.98

3 13 0.00025 0.013 16.1 1.9 1 23 212 234 212 234 0.97

4 13 0.00023 0.012 16.3 3.3 1 23 240 262 240 262 0.97

5 13 0.0015 0.077 13.7 2.8 1 23 268 290 268 290 0.97

6 13 0.00033 0.017 15.8 8.4 1 23 296 318 296 318 0.99

7 13 7.6e-05 0.0039 17.8 3.7 1 23 324 346 324 346 0.98

8 13 0.0014 0.072 13.8 4.7 1 23 352 374 352 374 0.99

9 13 0.01 0.51 11.1 1.4 1 23 380 402 380 402 0.97

10 13 0.00066 0.033 14.8 5.9 1 23 408 430 408 430 0.99

11 13 0.0052 0.27 12.0 2.2 1 23 436 458 436 458 0.97

12 13 0.0068 0.35 11.6 1.8 1 23 464 486 464 486 0.94

13 13 0.061 3.1 8.6 4.0 1 23 492 514 492 514 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00013	0.0069	17.0	2.0	1	23	105	127	105	127	0.98
2	13	1.1e-05	0.00054	20.4	1.8	1	23	165	187	165	187	0.98
3	13	0.00025	0.013	16.1	1.9	1	23	212	234	212	234	0.97
4	13	0.00023	0.012	16.3	3.3	1	23	240	262	240	262	0.97
5	13	0.0015	0.077	13.7	2.8	1	23	268	290	268	290	0.97
6	13	0.00033	0.017	15.8	8.4	1	23	296	318	296	318	0.99
7	13	7.6e-05	0.0039	17.8	3.7	1	23	324	346	324	346	0.98
8	13	0.0014	0.072	13.8	4.7	1	23	352	374	352	374	0.99
9	13	0.01	0.51	11.1	1.4	1	23	380	402	380	402	0.97
10	13	0.00066	0.033	14.8	5.9	1	23	408	430	408	430	0.99
11	13	0.0052	0.27	12.0	2.2	1	23	436	458	436	458	0.97
12	13	0.0068	0.35	11.6	1.8	1	23	464	486	464	486	0.94
13	13	0.061	3.1	8.6	4.0	1	23	492	514	492	514	0.98

Sequence Information

Coding Sequence: ATGGGCGATTTCACAACAACGACGACTATAATTTGTTTAGGAAAAATTAAGCAAGAACCGGAATGTGtaataaacaatgatttaataCCAAGTTCGAACTTGCCGGAGGTAACTTCCGAAGAGgaTACTAGCATCACCGACAACCCATTTGCGTGCAGCCAATGTAAGCTAGAGATCGACATcgttaaagaagaaattaaatgcGAGCCCCTTGATGACGGAATTAAGACTGAAACGATTATCTGTGACGAATACGTGTCATTTAACACCGACATTCCTTCGATTACTGAAGAAAACAATCTGGTAAACATTTTCTATTGCTATCAATGTAATTACGCGACTAATAACAAAAGCAATTTAACCGATCACATTTTCACACATAAATGTAATCAGTTAACAACACATAAAGATTCATTGAATGCAGATATTGGTGCACACTTTGATGTAAGTCGAGGGTGTGATCACCAGGTATCGCAATCTGGTAAACGCTCATTCGAATGTCACGATTGCGGTTACCGGACTATCAGCAAAGTTAACTTGAAGCTACATGTGAAAACTCATAGAAAAATTGGACAATTAAGTGATTTCAGCACCAACAccttaaaacaacatttaaagaCGGATGAACAACGTTTTAGTTGTGAGACGTGCGACTATAAATctccaaacaaacaaaatttgaggaAGCACCAATTTATCCACtctaaagaaatacaatttacttgcgacaagtgcgactacaaaacttATACCAAATCTTATTTGCGGAAGCACAAAATTATTCATTCCAACGTAAAACGTTTTACttgcgacaagtgcgactacaaagcTCATACCAATTCTAATTTACGGCAACATAAAATTATTCACTCTagcaaaaaacagtttaaatgcagtttatGCGATTTTCGTTGCAACTCGTCccataatttaaagaaacactTGAGGAAACATTCAGATGAACGACCATTTAGTTGCGACAAGTGTAACTACAAAACCAAGagcaaaagtaatttaaaaacgcaCAAAATGATTCACgttaaagaaaaacgttttaaatgcaatttgtgcgaatattgtacaaacttttcaagttatttaaaaGTGCATTTGATGAAACATTTAGATGAACGACCTTTTTCTTGTGATAAGTGCGATTTTAAGGCTACTACCAAGTATATTTTGCAGAAACACATGATTAACCACCGTAAAGAAAAACGTTATAAATGTAGTTTATGCGATTATAGTTGCAACTTTTcgtattatttgaaaaatcactTGCAAAAACATACAGATGAACGATTTTATAGttgcgacaagtgcgactacaaaacttATTTCAATCCCAATTTTCAGAGGCACAAAATTATCCACtttgaagaaaaactttttagttgTGCAAAGTGCGACTTCAAAACTCGCTTCCAATATAGTTTACGTAGGCACGAAGTTATCCATTCTAAggaaaaacgatttaaatgcaatttatgcaATTATCGATCTTACTTTCTGTATAAGTTAAAAGGGCACTTGAAGAAACATTGA
Protein Sequence: MGDFTTTTTIICLGKIKQEPECVINNDLIPSSNLPEVTSEEDTSITDNPFACSQCKLEIDIVKEEIKCEPLDDGIKTETIICDEYVSFNTDIPSITEENNLVNIFYCYQCNYATNNKSNLTDHIFTHKCNQLTTHKDSLNADIGAHFDVSRGCDHQVSQSGKRSFECHDCGYRTISKVNLKLHVKTHRKIGQLSDFSTNTLKQHLKTDEQRFSCETCDYKSPNKQNLRKHQFIHSKEIQFTCDKCDYKTYTKSYLRKHKIIHSNVKRFTCDKCDYKAHTNSNLRQHKIIHSSKKQFKCSLCDFRCNSSHNLKKHLRKHSDERPFSCDKCNYKTKSKSNLKTHKMIHVKEKRFKCNLCEYCTNFSSYLKVHLMKHLDERPFSCDKCDFKATTKYILQKHMINHRKEKRYKCSLCDYSCNFSYYLKNHLQKHTDERFYSCDKCDYKTYFNPNFQRHKIIHFEEKLFSCAKCDFKTRFQYSLRRHEVIHSKEKRFKCNLCNYRSYFLYKLKGHLKKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -