Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010000457.1:79975-82492[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0043 0.22 12.2 1.7 1 23 94 116 94 116 0.98

2 18 0.11 5.4 7.9 5.8 1 23 118 140 118 140 0.98

3 18 0.00069 0.035 14.7 5.3 1 23 160 182 160 182 0.99

4 18 0.02 1 10.1 2.1 2 23 199 220 198 220 0.95

5 18 0.063 3.2 8.6 7.8 1 23 226 248 226 248 0.97

6 18 0.31 16 6.4 3.9 3 23 259 279 257 279 0.96

7 18 0.045 2.3 9.0 2.2 2 23 286 307 285 307 0.94

8 18 0.0012 0.062 14.0 3.7 1 23 313 335 313 335 0.99

9 18 0.00017 0.0085 16.7 4.2 1 23 341 363 341 363 0.98

10 18 0.0036 0.18 12.5 4.1 1 23 369 391 369 391 0.98

11 18 0.0015 0.075 13.7 3.7 3 23 398 418 396 418 0.98

12 18 0.18 9.2 7.1 5.6 1 23 438 460 438 460 0.98

13 18 0.02 1 10.1 2.8 2 23 467 488 466 488 0.95

14 18 0.013 0.68 10.7 4.0 1 23 494 516 494 516 0.98

15 18 0.00012 0.006 17.2 2.5 1 23 522 544 522 544 0.98

16 18 0.00033 0.017 15.8 4.2 1 23 550 572 550 572 0.99

17 18 0.0046 0.24 12.1 1.6 2 23 578 599 577 599 0.96

18 18 0.00026 0.013 16.1 2.5 1 23 605 627 605 627 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0043	0.22	12.2	1.7	1	23	94	116	94	116	0.98
2	18	0.11	5.4	7.9	5.8	1	23	118	140	118	140	0.98
3	18	0.00069	0.035	14.7	5.3	1	23	160	182	160	182	0.99
4	18	0.02	1	10.1	2.1	2	23	199	220	198	220	0.95
5	18	0.063	3.2	8.6	7.8	1	23	226	248	226	248	0.97
6	18	0.31	16	6.4	3.9	3	23	259	279	257	279	0.96
7	18	0.045	2.3	9.0	2.2	2	23	286	307	285	307	0.94
8	18	0.0012	0.062	14.0	3.7	1	23	313	335	313	335	0.99
9	18	0.00017	0.0085	16.7	4.2	1	23	341	363	341	363	0.98
10	18	0.0036	0.18	12.5	4.1	1	23	369	391	369	391	0.98
11	18	0.0015	0.075	13.7	3.7	3	23	398	418	396	418	0.98
12	18	0.18	9.2	7.1	5.6	1	23	438	460	438	460	0.98
13	18	0.02	1	10.1	2.8	2	23	467	488	466	488	0.95
14	18	0.013	0.68	10.7	4.0	1	23	494	516	494	516	0.98
15	18	0.00012	0.006	17.2	2.5	1	23	522	544	522	544	0.98
16	18	0.00033	0.017	15.8	4.2	1	23	550	572	550	572	0.99
17	18	0.0046	0.24	12.1	1.6	2	23	578	599	577	599	0.96
18	18	0.00026	0.013	16.1	2.5	1	23	605	627	605	627	0.98

Sequence Information

Coding Sequence: ATGATGTCTGAAATAACTTCAACGACGTGCAGAAAAATTAAGGAAGAATCGGAACTTGAACTAAACAATGATTTAATGCCGGGGCTGAGCACCGAGCAAGACATCAGCACTACAGACACTTGTAATAAATGTAAGATCGAAACTGTAGCGCTCGACCAATTACATCCGGAAGTCAAACAGGAGCTTCTCGACGGTGGAATCAAGTCTGAAGAGATCGACATCGACGATTGTACGCCATCTAACCCTTCGATTATTGTGGAACACGttttggtaaacattttttactgttatCAATGTAATTACGAtactaatgataaaaaaaaattaaccgaaCACATCAACGTTCAtcgttttaaatgtaatcacTGTCGTTACACAACGTTCGATCATAACGCGTTAATCAACCACGAACAAAAACACTTGAAAATTCGAACACCTTTACATGAGAATGTCGGCTCGAATAGCGAAGACGGACCATTCAAATGCAACAAGTGCAAATACGCATGCAATTCCAGATTCAATTTGATCAACCATAAAAGAATTCATTACGCTAAACGACCGTCCAAAAACATTCGTACCGAAGAAAAACCGCTTAGTTGCGATTTGTGCGAGTATCGTTGCAGGTATCCGAGAACTTTGAAGAATCACAAAATCATTCACTCGGATACgaaaccgtttaaatgcaaTCTGTGCGATTATAGTTGCAATTATAAATGTAGTTTAAAAGTGCATTCGTCGAAACATTCAGATGAAAAATCTTATCTTTGCGAtaaCTGTAATAAATGCGACTTCAAATCTAAGTACAGATCGAGTGTTTGCAATCACGAAAAAATTCATAGTGAAGAAAAACCGCTTAGTTGCAATGTGTGTGAGTATCGTTGCAAATATCCAAGAAGTTTGAAGTACCACAAAGTTATCCACTCAGaaagaaaaccatttaaatgcaaCCTGTGCGATTACAGTTGCAACTATAAATTTAGCTTGGACGTGCACATTATGAAACATTCAGATGACATTGGTTATCGTTGCGATAAGTGCGACTATACAACTCACACCAAATCTAATCTAAAGAATCACAAAATCATTCACTCGGatgaaaaaccgtttaaatgcgaCGCGTGCGATTATCGTTGCAATTTTTCGTCTAGTTTAAAAACGCACTTGTTGAAACATTCAGATGAACCATTCGGTTGTGACAAGTGCGATTATAAAACATGCAGCAACTTTGACTTGCAGAGGCACAGACGTATCCACTCTGAAGAAAAATCCGATGTGATCAAGTCCAAAAGAATTCATTCTGGCGAAGAACCTTTCAGCTGCGATAAATGCGACTTCAAATCTAAGTACAGATCGAGTGTCtgcaatcacaaaaaaattcatgacGAAGAAAAACCGCTTAGTTGCAATATGTGCGAGTACCGTTGCAAGTTTCCGAGAAGTTTGAGGAATCACAAAATCATTCACTCGgataaaaaaccatttaaatgcagTGCGTGCGATTATCgttgcaattataaatttagCTTGGACGTGCACATGATGAAACATTCAGACGACATGGGTTATCGTTGTGAtaaatgcgattacaaaactcaGACCAAATCTAATTTGAAGAATCACAAAATTATTCATTCGGATGAGAAACCGTTCAAATGCGACGTGTGCAATTATCGTTGCAACTTTTCGTCTAGTTTAAAAGTGCACTTGATGAAACATTCAGACGAACCACTTAGTTGTGAcaagtgcgattacaaaactcCCAGCAAACTTTATTTGCGAAAACATAAACTTACTCACTCTAaagaaaaagtgtttaaatgcaatttgtgcAACTTTAGTACTAAATATtcggaaactttaaaaaagcacTTGATTATGCATTCTCAGTGGGCGGAAGCACCGCGATGA
Protein Sequence: MMSEITSTTCRKIKEESELELNNDLMPGLSTEQDISTTDTCNKCKIETVALDQLHPEVKQELLDGGIKSEEIDIDDCTPSNPSIIVEHVLVNIFYCYQCNYDTNDKKKLTEHINVHRFKCNHCRYTTFDHNALINHEQKHLKIRTPLHENVGSNSEDGPFKCNKCKYACNSRFNLINHKRIHYAKRPSKNIRTEEKPLSCDLCEYRCRYPRTLKNHKIIHSDTKPFKCNLCDYSCNYKCSLKVHSSKHSDEKSYLCDNCNKCDFKSKYRSSVCNHEKIHSEEKPLSCNVCEYRCKYPRSLKYHKVIHSERKPFKCNLCDYSCNYKFSLDVHIMKHSDDIGYRCDKCDYTTHTKSNLKNHKIIHSDEKPFKCDACDYRCNFSSSLKTHLLKHSDEPFGCDKCDYKTCSNFDLQRHRRIHSEEKSDVIKSKRIHSGEEPFSCDKCDFKSKYRSSVCNHKKIHDEEKPLSCNMCEYRCKFPRSLRNHKIIHSDKKPFKCSACDYRCNYKFSLDVHMMKHSDDMGYRCDKCDYKTQTKSNLKNHKIIHSDEKPFKCDVCNYRCNFSSSLKVHLMKHSDEPLSCDKCDYKTPSKLYLRKHKLTHSKEKVFKCNLCNFSTKYSETLKKHLIMHSQWAEAPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -