Ater014091.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002587.1:18956-23138[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 42 0.0034 0.17 12.6 0.3 2 23 100 121 99 121 0.96 2 42 0.92 47 4.9 0.4 2 23 124 145 123 145 0.96 3 42 0.35 18 6.2 3.0 2 23 160 181 159 181 0.95 4 42 0.054 2.8 8.8 3.8 1 23 187 209 187 209 0.97 5 42 0.096 4.9 8.0 3.3 1 23 215 237 215 237 0.97 6 42 0.12 5.9 7.7 3.2 1 23 243 265 243 265 0.95 7 42 0.00056 0.029 15.0 0.8 1 23 271 293 271 293 0.98 8 42 0.61 31 5.5 0.5 2 23 300 321 299 321 0.96 9 42 0.0045 0.23 12.2 3.4 1 23 327 349 327 349 0.97 10 42 0.025 1.3 9.8 2.5 1 23 355 377 355 377 0.97 11 42 0.005 0.26 12.0 2.9 2 23 384 405 383 405 0.97 12 42 0.068 3.5 8.5 2.8 1 23 411 433 411 433 0.95 13 42 0.0026 0.13 12.9 2.7 1 23 439 461 439 461 0.99 14 42 0.038 1.9 9.3 1.1 3 23 469 489 467 489 0.97 15 42 0.15 7.6 7.4 4.7 2 23 496 517 495 517 0.96 16 42 0.096 4.9 8.0 3.3 1 23 523 545 523 545 0.97 17 42 4.3 2.2e+02 2.8 2.2 1 14 551 564 551 565 0.84 18 42 0.18 9.2 7.1 2.1 2 23 565 586 564 586 0.95 19 42 0.096 4.9 8.0 3.3 1 23 592 614 592 614 0.97 20 42 0.096 4.9 8.0 3.3 1 23 620 642 620 642 0.97 21 42 0.096 4.9 8.0 3.3 1 23 648 670 648 670 0.97 22 42 0.096 4.9 8.0 3.3 1 23 676 698 676 698 0.97 23 42 0.096 4.9 8.0 3.3 1 23 704 726 704 726 0.97 24 42 0.054 2.8 8.8 3.8 1 23 732 754 732 754 0.97 25 42 0.054 2.8 8.8 3.8 1 23 760 782 760 782 0.97 26 42 0.096 4.9 8.0 3.3 1 23 788 810 788 810 0.97 27 42 0.096 4.9 8.0 3.3 1 23 816 838 816 838 0.97 28 42 0.096 4.9 8.0 3.3 1 23 844 866 844 866 0.97 29 42 0.096 4.9 8.0 3.3 1 23 872 894 872 894 0.97 30 42 0.096 4.9 8.0 3.3 1 23 900 922 900 922 0.97 31 42 0.054 2.8 8.8 3.8 1 23 928 950 928 950 0.97 32 42 0.054 2.8 8.8 3.8 1 23 956 978 956 978 0.97 33 42 0.096 4.9 8.0 3.3 1 23 984 1006 984 1006 0.97 34 42 0.096 4.9 8.0 3.3 1 23 1012 1034 1012 1034 0.97 35 42 0.054 2.8 8.8 3.8 1 23 1040 1062 1040 1062 0.97 36 42 0.096 4.9 8.0 3.3 1 23 1068 1090 1068 1090 0.97 37 42 0.096 4.9 8.0 3.3 1 23 1096 1118 1096 1118 0.97 38 42 0.096 4.9 8.0 3.3 1 23 1124 1146 1124 1146 0.97 39 42 0.096 4.9 8.0 3.3 1 23 1152 1174 1152 1174 0.97 40 42 0.054 2.8 8.8 3.8 1 23 1180 1202 1180 1202 0.97 41 42 0.096 4.9 8.0 3.3 1 23 1208 1230 1208 1230 0.97 42 42 0.0026 0.13 12.9 2.7 1 23 1236 1258 1236 1258 0.98
Sequence Information
- Coding Sequence
- ATGAACGATTCTACATGCGGAATTTGcttagaaaaaattaagcaagAAGTGAAATTTGATTTCGACTACAAATTAATACCGAACTTGAATGTGGAACTTCCTTCGGAAGACgCCGTTAACATCGCTGACAATTCAGTCGCTTGCAAGACATGCAAAGTGGAAGTCGTCGACGATGAACTCGAATATCCGTACCCGATTAAAGATGAAATCAAAGAGGAAGTCGTCGATGACAATTCCGTATTATTCAACACCGATTTATCTACGATTATTGAAGAACGCATTCCGGTAAATATTCTGTACTGTGATCTATGTAATTACGGCACCAACGACAAACGAAATTTAATCGATCACATTTATACTCACCGACTCAAATGTAATCGTTGTAATTTCACGACTGTTTATGATAGCGTTTTAGTAGTTCACCGACAAATTCATATGCACGAATGCACGGAAAAACATTCTGCTGCAGATGACAAATCctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttaagtgcgacaaatgcgactacaaaGGATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgacttCAAGACATATTTCAGGTATAAGTTGACAAGACACTCGATAGTTCATTCCGATGAAAAACCATTCAAATGCGATTCCTGTGACTACACCGCCAAGTccttggaaaatttaaaaatacacttgAACAGGCATTCGGGTAATCGTACTCTtagctgcgacaagtgcgacttCGAAACATACTACAAGGCGATTTTAACGAACCATCAAGAAACTCATTCCGGAaataaaccgtttaaatgtagtTTATGTGATTTCACCACTAGACGAATGCATAATTTAAGAATACATTTGGGTAAGCATTCGGGTGGATTTAACTTTAGCTGCGACAAATGCAATTTCAAGACTTACTCCAAATCAGTTTTGAAGAATCACGAAAAAGTTCATTCTATAAAAGAACTAGTGCAATGCAAATTGTGTGACTTCACTACGAAATATGCTCATTCTTTAAAAGAACACATGTATAAACACTCGGGTGAACGTAGTTttagctgcgacaaatgcgattacaaGACGTTCGCTAATTATTATTTGACGAGACACAAAAAAGCTCATTCTGttgaaaaaccgtttaaatgcgaTGTGTGCGAGTTCTCGAGTAAATACTCGACCAGGTTAAAAGATCACATGAGAAAACATACGGGCGAATTTAATTTCggctgcgacaagtgcgattTCAAAACTTACGCTAAATCCGCTTTGAGGAATCACAAACGAATTCATTCTGAAAAGAAGGTATTGAAATGCAATTTGTGTGACTACAGCAGTGCACATtcgaattgtttaaaattgcatttgtataaacattctggtgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttaagtgcgacaaatgcgactacaaGACGTACAACAATTCGAGctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttaagtgcgacaaatgcgactacaaaGGATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttaagtgcgacaaatgcgactacaaaGGATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttaagtgcgacaaatgcgactacaaaGGATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttaagtgcgacaaatgcgactacaaaGGATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttaagtgcgacaaatgcgactacaaaGGATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttaagtgcgacaaatgcgactacaaaGGATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttagctgcgacaagtgcgactacaaaggATACACCAATTGCTTGTTaaccaaacacaaaataattcattctaatgaacgaaattttaagtgcgacaaatgcgactacaaGACGTACAACAATTCGAGGTTGATAAGACATAGCAAAGTTCATTCTAAAAAAGAAGGGGAAACATTGAAACTACAGCGAACCTAA
- Protein Sequence
- MNDSTCGICLEKIKQEVKFDFDYKLIPNLNVELPSEDAVNIADNSVACKTCKVEVVDDELEYPYPIKDEIKEEVVDDNSVLFNTDLSTIIEERIPVNILYCDLCNYGTNDKRNLIDHIYTHRLKCNRCNFTTVYDSVLVVHRQIHMHECTEKHSAADDKSCDKCDYKGYTNCLLTKHKIIHSNERNFKCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDFKTYFRYKLTRHSIVHSDEKPFKCDSCDYTAKSLENLKIHLNRHSGNRTLSCDKCDFETYYKAILTNHQETHSGNKPFKCSLCDFTTRRMHNLRIHLGKHSGGFNFSCDKCNFKTYSKSVLKNHEKVHSIKELVQCKLCDFTTKYAHSLKEHMYKHSGERSFSCDKCDYKTFANYYLTRHKKAHSVEKPFKCDVCEFSSKYSTRLKDHMRKHTGEFNFGCDKCDFKTYAKSALRNHKRIHSEKKVLKCNLCDYSSAHSNCLKLHLYKHSGERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFKCDKCDYKTYNNSSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFKCDKCDYKGYTNCLLTKHKIIHSNERNFKCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFKCDKCDYKGYTNCLLTKHKIIHSNERNFKCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFKCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFKCDKCDYKGYTNCLLTKHKIIHSNERNFSCDKCDYKGYTNCLLTKHKIIHSNERNFKCDKCDYKTYNNSRLIRHSKVHSKKEGETLKLQRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -