Ater015411.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002674.1:207795-210518[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0004 0.02 15.5 1.6 2 23 55 76 54 76 0.97 2 19 0.15 7.8 7.4 0.4 2 23 79 100 78 100 0.95 3 19 1.3 67 4.4 0.4 10 23 159 172 157 172 0.90 4 19 0.00045 0.023 15.3 2.2 2 23 175 196 174 196 0.97 5 19 0.019 0.96 10.2 0.4 2 23 199 220 198 220 0.97 6 19 0.12 5.9 7.7 0.2 1 23 245 267 245 267 0.95 7 19 0.00017 0.0086 16.7 3.0 1 23 291 313 291 313 0.99 8 19 0.019 0.96 10.2 0.4 2 23 316 337 315 337 0.97 9 19 0.12 6 7.7 0.1 1 23 362 384 362 384 0.95 10 19 0.00014 0.007 17.0 2.2 1 23 408 430 408 430 0.99 11 19 0.063 3.2 8.6 0.3 2 23 433 454 432 454 0.96 12 19 0.12 6 7.7 0.1 1 23 479 501 479 501 0.95 13 19 0.00017 0.0086 16.7 3.0 1 23 525 547 525 547 0.99 14 19 0.23 12 6.8 0.2 2 23 550 571 549 571 0.95 15 19 0.12 5.9 7.7 0.2 1 23 596 618 596 618 0.95 16 19 0.00017 0.0086 16.7 3.0 1 23 642 664 642 664 0.99 17 19 0.013 0.68 10.7 1.6 1 23 709 732 709 732 0.89 18 19 0.071 3.6 8.4 0.5 2 23 735 756 734 756 0.97 19 19 4.3 2.2e+02 2.8 0.1 1 11 781 791 781 798 0.82
Sequence Information
- Coding Sequence
- ATGGATCACGAAAAAGTACAACACAACAAGAATGGAAGAACAAAACAAGGAATATATGCGAAAACAGAAAAAGTACACACGGGTGAACAAATGCACTCTAACGCTAATTTAGACTGTGATACAGCAGAGATTCGAccgaaagaaagaaaagaacattctttaaaatgcgaCTTGTGCGATTACAGAAGTACCCGAATCGGTCATTTGCAAATTCATATGaataaacattctttaaaatgcgaCTTGTGCGACTACGAGACATTGGTAGAAAGTGAGTTTTTTCGTCACCAAAGAGTACACACTGACAAACAAGTCCATTCTATCACCAATGCATCCAATAACAAAGGTTCTTTACAAACTCATATGAACTACTTTATATGCGATGAATGCGACTACAAGACTTTAGTAGAAATGGAGTTTTTGGAGCACGAAAAAGTACACACTGACAAACAAGTCCATTCTATCACCAATTCATCCAGTAACAAAAGTCCTTTACAAACTCATATGaataaacattctttaaaatgcgaCTTGTGCGATTACAGAAGTACTCGAATCGGTCATTTGCAAACTCATATGaataaacattctttaaaatgcgaCGAATGCAACTACAAGACTATGGTAGAAAGTGAGTTTTTGGATCACCAAAGAGTACACACTGACAAACAAGTCCATTCTATCACCAATGCATCCAGTAACAAAGGTTCTTTACAAGCTCATATGAACTACTTTATATGCGACGAATGCGACTACACAACGTCAGTGGAAATGGACTTTTCGGAACACGAAAAAGAACATAAAGGAAAACCAGTGCTCTCTGACGTCAATTTACCCAAAcacaaatcaagaaaaattgaagaaaagaagTTTAAATGCGACTTGTGCGATTACAGAAGTACCCGAATCGGTCATTTGCAAACTCATATGaataaacattctttaaaatgcgaCGAATGCAACTACAAGACTATGGTAGAAAGTGAGTTTTTGGATCACCAAAGAGTACACACTGACGAACAAGTTCATTCTATCACCAACTCATCCAGTAACAAAAGTACTTCACAAACTCATATGAACTACTTTATATGCGACGAATGCGACTACACAACGTCAGTGGAAATGGACTTTTTGGAACATGAAAAAGAACACAAGGGAAAACCAGCGCCCTCTGACGTCAATTTACCCAAAcacaaatcaagaaaaattgaagaaaagaagTTTAAATGCGACTTGTGCGATTACAGAAGTACCCGAATCGGTCATTTGCAAATTCATATGaataaacattctttaaaatgcgaCGAATGCGACTACGAGACATTGGTAGAAAGTGAGTTTTTTCGTCACCAAAGAGTACACACTGACAAACAAGTCCATTCTATCACCAATGCATCCAGTAACAAAGGTTCTTTACAAACTCATATGAACTACTTTATATGCGACGAATGCGACTACACAACGTCAGTGGAAATGGACTTTTTGGAACACGAAAAAGAACACAAAGGAAAACCAGCGCCCTCTGACGTGAATTTACCCAAAcacaaatcaagaaaaattgaagaaaagaagTTTAAATGCGACTTGTGCGATTACAGAAGTACTCGAATCGGTCATTTGCAAACTCATATGaataaacattctttaaaatgcgaCGAATGCGACTACAAGACTTTGGTAGAGAGTGAGTTTTTGGATCACCAAAGAGTACACACTGACGAACAAGTTCATTCTATCACCAATTCATCCAGTAACAAAAGTCCTTCACAAACTCATATGAACTACTTTATATGCGACGAATGCGACTACACAACGTCAGTGGAAATGGACTTTTCGGAACACGAAAAAGAACACAAAGGAAAACCAGCGCCCTCTGACGTGAATTTACCCAAACACAAATCacgaaaaattgaagaaaagaagTTTAAATGCGACTTGTGCGATTACAGAAGTACTCGAATCGGTCATTTGCAAACTCATATGaataaacattctttaaaatgcgaCGAATGCACTACAAGACTTGGTAGAAGTGAGTTTTTGGATCACAAAGAGTACACACTGACAACAAGTCATTCTATCACAATCATCAGTAACAAAGTCTTACAAACTCATATGAACTACTTTATATGCGACGAATGCGACTACACAACAAGTACTCGAATCGGTCATTTGCAAACTCATATGAATAAACATTCTTTGAAATGCGACGAATGCAACTACAAGACTATGGTAGAAAGTGACTTTTTGGATCACAAAAGAGTACACACTGACAAACAAGTCCATTCTATCACCAATGCATCCAGTAACAAAGGTTCTTTACAAGCTCATATGAACTACTTTATATGCGACGAATGCGACTACACAACGTCAGTGGAAATGGACTTTTGGAACACGAAAAAGAACAAAAGGAAAACCAGTGCCTCTGACGTCAATTTACCCAAAcacaaatcaagaaaaattgaagaaaagaagTTTAAATGCGAACTTGTGCAAGATCTATCAGAAGTACTCGAATCGGGATCCATTTGCAAACTCATATGa
- Protein Sequence
- MDHEKVQHNKNGRTKQGIYAKTEKVHTGEQMHSNANLDCDTAEIRPKERKEHSLKCDLCDYRSTRIGHLQIHMNKHSLKCDLCDYETLVESEFFRHQRVHTDKQVHSITNASNNKGSLQTHMNYFICDECDYKTLVEMEFLEHEKVHTDKQVHSITNSSSNKSPLQTHMNKHSLKCDLCDYRSTRIGHLQTHMNKHSLKCDECNYKTMVESEFLDHQRVHTDKQVHSITNASSNKGSLQAHMNYFICDECDYTTSVEMDFSEHEKEHKGKPVLSDVNLPKHKSRKIEEKKFKCDLCDYRSTRIGHLQTHMNKHSLKCDECNYKTMVESEFLDHQRVHTDEQVHSITNSSSNKSTSQTHMNYFICDECDYTTSVEMDFLEHEKEHKGKPAPSDVNLPKHKSRKIEEKKFKCDLCDYRSTRIGHLQIHMNKHSLKCDECDYETLVESEFFRHQRVHTDKQVHSITNASSNKGSLQTHMNYFICDECDYTTSVEMDFLEHEKEHKGKPAPSDVNLPKHKSRKIEEKKFKCDLCDYRSTRIGHLQTHMNKHSLKCDECDYKTLVESEFLDHQRVHTDEQVHSITNSSSNKSPSQTHMNYFICDECDYTTSVEMDFSEHEKEHKGKPAPSDVNLPKHKSRKIEEKKFKCDLCDYRSTRIGHLQTHMNKHSLKCDECTTRLGRSEFLDHKEYTLTTSHSITIISNKVLQTHMNYFICDECDYTTSTRIGHLQTHMNKHSLKCDECNYKTMVESDFLDHKRVHTDKQVHSITNASSNKGSLQAHMNYFICDECDYTTSVEMDFWNTKKNKRKTSASDVNLPKHKSRKIEEKKFKCELVQDLSEVLESGSICKLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -