Ater015416.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002674.1:246514-248511[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00091 0.046 14.4 2.2 1 23 90 112 90 112 0.98 2 18 7.8e-05 0.004 17.7 0.2 2 23 115 136 114 136 0.97 3 18 2.8 1.4e+02 3.4 0.8 3 17 152 166 150 171 0.86 4 18 0.11 5.5 7.8 4.1 1 23 209 231 209 231 0.98 5 18 0.0051 0.26 12.0 5.2 1 23 237 259 237 259 0.96 6 18 0.00035 0.018 15.7 2.1 1 23 265 287 265 287 0.98 7 18 0.011 0.56 11.0 5.2 1 23 293 315 293 315 0.95 8 18 0.002 0.1 13.3 5.8 1 23 321 343 321 343 0.98 9 18 4.7e-05 0.0024 18.4 3.7 1 23 370 392 370 392 0.98 10 18 0.00035 0.018 15.7 2.5 1 23 398 420 398 420 0.97 11 18 0.0002 0.01 16.4 2.8 1 23 426 448 426 448 0.98 12 18 0.042 2.1 9.1 2.9 2 23 455 476 454 476 0.95 13 18 0.00049 0.025 15.2 1.9 1 23 481 503 481 503 0.98 14 18 0.11 5.6 7.8 6.9 1 23 509 531 509 531 0.97 15 18 0.00011 0.0054 17.3 2.0 1 23 537 559 537 559 0.98 16 18 0.024 1.2 9.9 6.4 1 23 565 587 565 587 0.96 17 18 0.0008 0.041 14.5 6.2 1 23 593 615 593 615 0.98 18 18 0.16 8.2 7.3 3.8 1 23 622 644 622 644 0.96
Sequence Information
- Coding Sequence
- ATGATTAAACAGGAAGATGTAAGCAAAGATTCAATATCAAACTTGAAGTTGGAGTTTCCTTCCGAAGAAgCTCTAAGCATCATCGAAAACCCAGTTGCGTGTAACAAATGCAAGGTGGAGATTAacgaaaaacaacgaaatgAATCGGATCAGCCTTTCGTCAAAAAGGAATCGGTCAATGAGAGTGAAGTAATTGTCAAAGACGAATCTTTAGTATTCAACACCGACCTCCCTTTATGCATCGAGGAAAGTAttcatataaactttttttactgcTACGAATGTAATTATAACACAAACGACAAACGAAATTTAACCGATCACATTTTTACCCACCTTCTCAAATGTGATCAGTGCGGTTACTCAACTTTCGATAATTCCTCATTGATCTCTCACATACAAATTCACCGTGGTCATATTTCTACAatcaaaaatggtaaaaatttatATGGATGTAGTTACTGCGATTATCGAACAAAcagtaaaaatacttttaaattccATGTGAGTATGTGTTTAAAAGGACAAACTGCCGAAGACACCGTCACGAAGCAGCTTCTAATAACTAAGTGTGGTAAATCGACTTCAAAACACTCACGTCGTCGCATGCTCCGCGCAGATACTTTTAAATGTGATTTATGCGATTACAGCAGTACCACatacagatacttcaaattcCATATGCTTAAACACTCAACTGTGGTTCCATTTTATTGTGATGTGTGTGATTACAAAACGTACAACAAACAGCATTTGAAAAGACACAAATTTGTTCACTGTCgagaaaaaccgtttaagtgtaatttatgcGATTACAACTGTATTCAGTCTGCAGATTTAAAAACCCACGTGCTTAAACACGCTGGTGAGACCCCATTTTGTTGTGATTTGTGTGATTTCAAAACGAATACCAAAAGCAACTTGAAATCTCACAAGTTCGTTCACTCcaaagaaaaaccatttaaatgcaatttatgtgATTATAGCTGTAGAACATCGGCATGTTTAAAAATGCACGTGCTTAAACACTCTGTTGAGACTCCATTCGGTTGTGATTTTAAAAGCAACTTAAAATCTCACGAATTCATTCACTCCGAAGGAAAACCATTTCAATGCAATTTATGTGATTATAGCTGTATTACATCgaccaatttaaaaattcacatgTTTAAGCACTCGGGTGAGATTCCATTCAGTTGTGATAAGTGTGATTacaaaacgtataaaaaagtaaacttgAAAAGACACATATTTGTTCACTCtgaagaaaaaccatttaagtGCAATTTATGCGATTATAGCTGTATTAaatcagaatatttaaaaattcatatccTTAAACACTCTGGTGAGGCTTCGTTGTGTTGTGATACATGTGAATTCAAAACGTACACCCAAAGTCAgttgaaaattcacaaattgGTTCACTCtgaaaaacggtttaaatgcaatttatgtgATTATGGCAGTATTACATCGCGTAGCTTTAAAAATCACATGCTCAAACACTCCGGTGAGACTCCATTTTGTTGTGATGCATGTGATTACAAGTCTTATTctagaaaaaacttaaaacaccACAAACGCGTTCACTCTaaggaaaaacaatttatgtgcAATTTATGTGATTATGGTTGTAATGTATCGAGTTCTTTAAAAACCCACATGCTTACGCACTCCGGTGAGACTCCGTTTTGTTGTGATAAGTGTGATTTCAAAACGAAAACCAAAAGCTACTTAAATACTCACAAATACATTCACTTcaaagaaaaaccatttaaatgcaatttatgtgATTATTGTTGTATTCAATCGAGAAATTTTGAAATCCACATGTCTAAACACTCTGGCGAGACCCCACCGTTCTGTTGTGATCAGTGTGAATTCAAAACGTACgtcaaaataaacttgaaaaggCACAAACTCGTTCActccaaagaaaaataa
- Protein Sequence
- MIKQEDVSKDSISNLKLEFPSEEALSIIENPVACNKCKVEINEKQRNESDQPFVKKESVNESEVIVKDESLVFNTDLPLCIEESIHINFFYCYECNYNTNDKRNLTDHIFTHLLKCDQCGYSTFDNSSLISHIQIHRGHISTIKNGKNLYGCSYCDYRTNSKNTFKFHVSMCLKGQTAEDTVTKQLLITKCGKSTSKHSRRRMLRADTFKCDLCDYSSTTYRYFKFHMLKHSTVVPFYCDVCDYKTYNKQHLKRHKFVHCREKPFKCNLCDYNCIQSADLKTHVLKHAGETPFCCDLCDFKTNTKSNLKSHKFVHSKEKPFKCNLCDYSCRTSACLKMHVLKHSVETPFGCDFKSNLKSHEFIHSEGKPFQCNLCDYSCITSTNLKIHMFKHSGEIPFSCDKCDYKTYKKVNLKRHIFVHSEEKPFKCNLCDYSCIKSEYLKIHILKHSGEASLCCDTCEFKTYTQSQLKIHKLVHSEKRFKCNLCDYGSITSRSFKNHMLKHSGETPFCCDACDYKSYSRKNLKHHKRVHSKEKQFMCNLCDYGCNVSSSLKTHMLTHSGETPFCCDKCDFKTKTKSYLNTHKYIHFKEKPFKCNLCDYCCIQSRNFEIHMSKHSGETPPFCCDQCEFKTYVKINLKRHKLVHSKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -