Ater006084.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010001107.1:3157151-3163055[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.6 30 5.5 2.6 1 23 299 321 299 321 0.85 2 12 0.0077 0.39 11.5 3.3 1 23 410 433 410 433 0.96 3 12 0.008 0.41 11.4 3.0 1 23 439 461 439 461 0.97 4 12 3.5e-05 0.0018 18.8 0.3 1 23 469 492 469 492 0.92 5 12 2.1e-06 0.00011 22.7 4.6 1 23 498 520 498 520 0.98 6 12 6.8e-05 0.0035 17.9 0.8 1 20 526 545 526 548 0.93 7 12 2.4e-06 0.00012 22.5 2.7 1 23 554 576 554 576 0.98 8 12 1.9e-05 0.00097 19.6 0.4 1 23 582 604 582 604 0.98 9 12 9.4e-05 0.0048 17.5 7.8 1 23 610 632 610 632 0.97 10 12 3.7 1.9e+02 3.0 6.9 2 23 639 660 638 660 0.95 11 12 0.00017 0.0085 16.7 1.3 1 23 666 688 666 688 0.98 12 12 2.4e-06 0.00012 22.5 1.7 1 23 694 716 694 716 0.98
Sequence Information
- Coding Sequence
- atgaaattgGTGATGACAAAGGGGACCGGCTCTTTGGGTATACCTATAAAATTATGCGCTCAAGAAAACAACAACGgtacaaatttatttccacGCGGAGAAAACGAACAAGATTTAAGTCAACTTGTGAATAAGTATTTGCCCTtaaagGTAGAACGTGATGGgaaatttccaattttaatatGCCCCGGTTGCAATATACAATTGGAAGCCACTAagcaatttttagatttaattatcgAAGGACAAAATAAACTTCGAGATTTGTTTCGTTCACAACAAGATACACTTCGCagacaagaaaaacaaaggtTGCAGTTGGAGAgtgctttaaaaaatgtaaatccaTCTTCGAGTGTTGAAACATATACTATTCAATCAGATGAATCTGGTGAAAAGTTCGTTATACAGAtattttcggAAGGCCCTTTATTTCCTCCTGAACATGAAATGTCGCTTAAAGCCGAGGGTTTAGAACGTCCTAAACGTAAACGTGGCAGACCACCGAAACCTCCACCTCCTGTTGAAGGTGCTCTGGTTGAAGAAGATGATGCTCTTAAAAACGATTTAGATCAAGATGTGGAAGATGATGGGGATGATCTTGAAAGTAGAAGAAAACGAAAGATTAAAGTACCTTCAAGATTTCAAGAGGCTGTGCAGGGGAAAGAATTagatagaatttttaaagaagaaggTGTACTTGGAGAAGATTCATTCTCCGAAGACGAAAATCACTTAGAAACAGAGAATAGTAATAAAGGGGGCGACGAAGTAATTGGCCATTTGCAAAGTAGAGAAGGTGAAGACCTAGGCGAACTGGTCGTAGTAAACCGAAGTACCAataaaatcagaataaaaaataaagatgATTCAGACCttgtaaagagaaaaaagtacGAATGCGAAATTTGCGGAAGAGAATTTTTGCACCACGGTCGTTATGAAGCGCACAAAacgtttcacaaaaatattaaatatcagTGTTGCACAAATGAATGCGGTATGGAACAtgaaaataaagcaattataGAAAAGCACCAAAGAGAAACTGGTCACACTggaattcttttttttgaatgtattcaTGATTATGGGTCTAAAGTTCAAATTCATTTACCTCAAAGTGctgatgaagaagaagaaaataaacccTCCGATGACAATAATGAAGAAGTTGAAAATGATGAACAAAACCTAAATCACCCCGTTGatattgtagaaaataagtTTACATGCAGTATTTgcagtaaaaatttttcatgtaaacaaaattttgaagttcaTCAAAAAGCTGTGCATGAAAATCATAGGCCATACCAATGtgataaatgtgaaaaatcttTTCCGTACATAAACAGTCTTAAATGTCATATGCTTCAACACagtgagaaaaatgaaaaattataccCTTGTGAAGTGTGTAACAAAGTATTTAATCATCCTAGTAGTTTAGTTTATCACCGCGAGGCGGAGCATAATAACGGAAGACGTTTCGTTTgcaataaatgtaacaaaagcTTTAAACACAAACAATTGTTACAAAGACATCAACTGGTACACTCTAATGAACGCCCTCACACTTGCAAACTGTGCGATGCCAGTTTTAAAACACgagcaaatttattaaatcacatGCCAATACACACTGGGGAAAAGAAGTATTATTGTACTCAATGCGGGCAGAGTTTTGCACATAAAACTTCACTTACTCTTCATATGCGTTGGCACAGTGGGCAAAAACCATACGAATGTGATGTTTGCATGAAAACGTTTTCTCAGAAAGGAAATCTAGCCGAGCACAAACGAATACATACAGGTGAAAAACCATTTTGTTGTGATCATTGCGGACGTAAATTTACTACATCGTCGCAGTTTAAACTTCACGTTAAAAGGCATACTGGTGAAAGGCCGTGGAGATGCGAGTATTGTTCAAAGACATTTTTACACAAAGATACATGGAAATGTCACACGAGGCGACATCGAAACGAAAGACCGTACCAATGTAAACAATGTTTTAGAGGTTTCACTGAACAATGGGCTCTTAAAAAACATGAGCGTCTTCATACTGGTGAAAAACCATATGTGTGCGACATTTGTCAAAAAGGGTTTGCAGACTGCTCGAACTTAACAAAGCATAAAAAGGTGCATGGAAAtccgaaattgaaaaaaaccaaCGTAAAAccgaaaaacttaaaaatgatttcttcgGACGgAGTTAATCAAGTTGTATATTTGGCTTACCAAGAATCGAACTCCAGCGATGGGGTTGTACAAACCCTTGTGCATATAATGGATCCATTAGAAGGTTCCTCTAATGACGAAACGGATGCCTTACAGGAAAATGCATATATATCTCCAATTCTGCCAGAGTCTCTTTCTCATTTTCAGGAACTTATTGATGAAGATGGTAGTGCAATAAGTCTGACTACATCAGACGGACAGCAGGTAAAAGTTTTAGCAACAGTTGAAGAGGGTCAGCAAAATTTACAGTGTCTCATGCCCAATGGCACTTTAGTACCTATAAACTTGACCGTTCAAAACGGAAAACCAGTTGTTTCAACTGCACCTTTACAAAGTGATATTAAGATACCTGATTCagttattaatgaaaatcaaaGTACTTCTGGTTCTGGTGCTACAAatcaattattagaaaataatatacaatttttaaacgaGGACGTTCCAAATAAATTAGACAatagtatacaatttttaacggAAGATgggcaaaatatttgttttgtcacGGCGTACAATATCGACGAAGGGATAAATCCCCATTACTTAGCCATGGCATAA
- Protein Sequence
- MKLVMTKGTGSLGIPIKLCAQENNNGTNLFPRGENEQDLSQLVNKYLPLKVERDGKFPILICPGCNIQLEATKQFLDLIIEGQNKLRDLFRSQQDTLRRQEKQRLQLESALKNVNPSSSVETYTIQSDESGEKFVIQIFSEGPLFPPEHEMSLKAEGLERPKRKRGRPPKPPPPVEGALVEEDDALKNDLDQDVEDDGDDLESRRKRKIKVPSRFQEAVQGKELDRIFKEEGVLGEDSFSEDENHLETENSNKGGDEVIGHLQSREGEDLGELVVVNRSTNKIRIKNKDDSDLVKRKKYECEICGREFLHHGRYEAHKTFHKNIKYQCCTNECGMEHENKAIIEKHQRETGHTGILFFECIHDYGSKVQIHLPQSADEEEENKPSDDNNEEVENDEQNLNHPVDIVENKFTCSICSKNFSCKQNFEVHQKAVHENHRPYQCDKCEKSFPYINSLKCHMLQHSEKNEKLYPCEVCNKVFNHPSSLVYHREAEHNNGRRFVCNKCNKSFKHKQLLQRHQLVHSNERPHTCKLCDASFKTRANLLNHMPIHTGEKKYYCTQCGQSFAHKTSLTLHMRWHSGQKPYECDVCMKTFSQKGNLAEHKRIHTGEKPFCCDHCGRKFTTSSQFKLHVKRHTGERPWRCEYCSKTFLHKDTWKCHTRRHRNERPYQCKQCFRGFTEQWALKKHERLHTGEKPYVCDICQKGFADCSNLTKHKKVHGNPKLKKTNVKPKNLKMISSDGVNQVVYLAYQESNSSDGVVQTLVHIMDPLEGSSNDETDALQENAYISPILPESLSHFQELIDEDGSAISLTTSDGQQVKVLATVEEGQQNLQCLMPNGTLVPINLTVQNGKPVVSTAPLQSDIKIPDSVINENQSTSGSGATNQLLENNIQFLNEDVPNKLDNSIQFLTEDGQNICFVTAYNIDEGINPHYLAMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003284;
- 90% Identity
- -
- 80% Identity
- -