Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002424.1:419921-421701[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0035 0.18 12.5 5.4 1 23 122 144 122 144 0.98

2 16 0.0071 0.36 11.6 3.3 1 23 146 168 146 168 0.98

3 16 4.7e-06 0.00024 21.6 3.7 2 23 187 208 186 208 0.97

4 16 0.0036 0.18 12.5 4.5 1 23 214 236 214 236 0.97

5 16 0.0016 0.08 13.6 3.0 1 23 242 264 242 264 0.99

6 16 0.0022 0.11 13.2 7.7 1 23 270 292 270 292 0.98

7 16 0.00011 0.0056 17.3 3.3 1 23 298 320 298 320 0.98

8 16 0.082 4.2 8.2 8.3 1 23 326 348 326 348 0.96

9 16 0.041 2.1 9.1 1.6 1 23 354 376 354 376 0.98

10 16 3e-05 0.0015 19.0 4.0 1 23 382 404 382 404 0.98

11 16 0.0034 0.17 12.6 8.0 1 23 410 432 410 432 0.97

12 16 0.001 0.051 14.2 5.7 3 23 440 460 438 460 0.98

13 16 0.00056 0.029 15.0 3.4 1 23 466 488 466 488 0.98

14 16 0.0016 0.079 13.6 3.9 1 23 494 516 494 516 0.98

15 16 0.0018 0.092 13.4 2.9 1 23 522 544 522 544 0.99

16 16 0.11 5.6 7.8 3.7 1 23 550 572 550 572 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0035	0.18	12.5	5.4	1	23	122	144	122	144	0.98
2	16	0.0071	0.36	11.6	3.3	1	23	146	168	146	168	0.98
3	16	4.7e-06	0.00024	21.6	3.7	2	23	187	208	186	208	0.97
4	16	0.0036	0.18	12.5	4.5	1	23	214	236	214	236	0.97
5	16	0.0016	0.08	13.6	3.0	1	23	242	264	242	264	0.99
6	16	0.0022	0.11	13.2	7.7	1	23	270	292	270	292	0.98
7	16	0.00011	0.0056	17.3	3.3	1	23	298	320	298	320	0.98
8	16	0.082	4.2	8.2	8.3	1	23	326	348	326	348	0.96
9	16	0.041	2.1	9.1	1.6	1	23	354	376	354	376	0.98
10	16	3e-05	0.0015	19.0	4.0	1	23	382	404	382	404	0.98
11	16	0.0034	0.17	12.6	8.0	1	23	410	432	410	432	0.97
12	16	0.001	0.051	14.2	5.7	3	23	440	460	438	460	0.98
13	16	0.00056	0.029	15.0	3.4	1	23	466	488	466	488	0.98
14	16	0.0016	0.079	13.6	3.9	1	23	494	516	494	516	0.98
15	16	0.0018	0.092	13.4	2.9	1	23	522	544	522	544	0.99
16	16	0.11	5.6	7.8	3.7	1	23	550	572	550	572	0.98

Sequence Information

Coding Sequence: ATGGCAAAAACTGCAATATCTTGTCGAAtatgtttaaaagaaataagggAAGGAACACCATTTCATTCCGTAAACAACGACCCTAATAAGTTGTCGACCTTTCCTGTAAAAACAGAATTGAAGGACGATGAACACCCACTTGTGTGCAACGAATGCAACCTCAAAACTGTTGAAGATCgccaaaatgaaatcattttaaaaaccgaaaatCTACCACAAACGACAAACTCCGCTTCACTTGTTAGTGaagaaatattcataaaaacaatCAAAGACGAGTTTGTTGAAGTCGCCGTTAAAAATGAATGTATGGTAAAAGAAGAATACGATATGCCTATCTGGGTGGAAGAATCTCGCATTTCGTACTACTGTCAGCAATGTAACTACGCAACTTGCAATAAACGAACATTAACCAATCACATGTTTAGTCACCAATATAAATGCAATCTGTGCAATTACGCTACATTTGATCATTCCTCATTAGACAAGCATAAGGAAACGCACACGTATCAGACCAAGCCTCGGCACAGTAAAATACGCACTCAAGAAAAACtgttacaatgtaatttttgtgattattgcagcagTACATCCAGCAACCTGAGAAAACATATGATCACACATTCTGGGGTGAAATCTTACAGctgtgataagtgcgactacaaatgttttgataaatatagttTAACTTTGCATAATAGAATACACTCTCAAGAAAagccgtttaaatgtaatttttgtgattattgcagcaATGTACCTCGTGCCTTGAGAATGCATATGTACACACATACTGGGGAAAAACCTTACAGctgtgataagtgcgactacagATGTTGCAGAAAAAGTTCGTTGTCTCTGCACAATAGAACGCACACTcaagaaaaaccttttaaatgtaatatttgcgATTATCGCAGCAATCAAGCTGTCCACTTAAAAACCcacatgtacaaacattctggGGAGAAACCTTTCAGTTGTGATAAGTGCGGCTACAggtgttacaaaaaaagtgatttatcccagcattgtagaaaacacactcaagaaaaaccgtttaagtgtagtttttgtgattttagcAGCATTTATGGAAATCTATTGAAAATACACATGTACAAACATTATGGGGAGAAACCTTACAGCTGTGACAAGTGCGATTACAGGTTTTGCAACAAAAGTACATTGGCTCAGCACAATAGAGTGCACactaaagaaaaaccgtttatgTGTAATTTTTGCGGTTATTGCAGCAGTAGCAAATTCCATTTGAAAATgcacatgtacaaacattctggAGAGAGACCTTTCGGctgtgataagtgcgactacaagTGTATCAAGAAAAGTGATTTATGTCGACACGTAAGAACACACactcaagaaaaaccgtttaaatgtaatttttgtgattattgcggGAAACGTGCGGCCGACTTAAAAACGCACTTGTTCACCCATTCTGGGGAGAAACCTTTCAGttgcgacaagtgcgactatAGATGTTACCTCAGAAGTGCTTTATCTCGACACTATAGAATACACACTCAAGAAAAACCtttcaaatgtaatttgtgTGATTATTGCGCGAATCGAGCGTTCGACGTAAAAACGCACATGATGAAACATTCTGGGGAGAAACCTTTCAGTTGCGATAAGTGCGATTACAAATGTTATCTCAAAAGTGTTTTATCTCAACACAATAGGGTGCACACTAAAGCTCATTAA
Protein Sequence: MAKTAISCRICLKEIREGTPFHSVNNDPNKLSTFPVKTELKDDEHPLVCNECNLKTVEDRQNEIILKTENLPQTTNSASLVSEEIFIKTIKDEFVEVAVKNECMVKEEYDMPIWVEESRISYYCQQCNYATCNKRTLTNHMFSHQYKCNLCNYATFDHSSLDKHKETHTYQTKPRHSKIRTQEKLLQCNFCDYCSSTSSNLRKHMITHSGVKSYSCDKCDYKCFDKYSLTLHNRIHSQEKPFKCNFCDYCSNVPRALRMHMYTHTGEKPYSCDKCDYRCCRKSSLSLHNRTHTQEKPFKCNICDYRSNQAVHLKTHMYKHSGEKPFSCDKCGYRCYKKSDLSQHCRKHTQEKPFKCSFCDFSSIYGNLLKIHMYKHYGEKPYSCDKCDYRFCNKSTLAQHNRVHTKEKPFMCNFCGYCSSSKFHLKMHMYKHSGERPFGCDKCDYKCIKKSDLCRHVRTHTQEKPFKCNFCDYCGKRAADLKTHLFTHSGEKPFSCDKCDYRCYLRSALSRHYRIHTQEKPFKCNLCDYCANRAFDVKTHMMKHSGEKPFSCDKCDYKCYLKSVLSQHNRVHTKAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -