Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002542.1:53204-55238[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.3 3.7e+02 2.1 0.3 2 23 93 114 92 114 0.86

2 18 2.6e-05 0.0013 19.2 2.2 1 23 149 171 149 171 0.96

3 18 0.00027 0.014 16.0 3.4 1 23 177 199 177 199 0.99

4 18 1.6e-05 0.00081 19.9 2.6 1 23 205 227 205 227 0.99

5 18 0.2 10 7.0 2.8 1 23 233 255 233 255 0.97

6 18 0.00012 0.006 17.2 3.1 1 23 261 283 261 283 0.99

7 18 0.0031 0.16 12.7 3.9 3 23 291 311 289 311 0.96

8 18 0.014 0.72 10.6 1.6 1 23 317 339 317 339 0.98

9 18 0.22 11 6.9 1.0 2 23 346 367 345 367 0.94

10 18 0.0011 0.056 14.1 2.2 1 23 373 395 373 395 0.99

11 18 0.0015 0.078 13.7 1.2 2 23 428 449 427 449 0.98

12 18 0.14 7.2 7.5 0.9 2 23 456 477 455 477 0.96

13 18 0.00073 0.037 14.7 4.3 1 23 483 505 483 505 0.99

14 18 0.11 5.5 7.8 1.3 1 23 511 533 511 533 0.98

15 18 0.00093 0.048 14.3 1.0 1 23 539 561 539 561 0.99

16 18 0.04 2.1 9.2 1.9 1 23 567 589 567 589 0.97

17 18 1e-05 0.00053 20.5 2.2 1 23 595 617 595 617 0.99

18 18 0.005 0.25 12.0 0.4 3 23 625 645 623 645 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.3	3.7e+02	2.1	0.3	2	23	93	114	92	114	0.86
2	18	2.6e-05	0.0013	19.2	2.2	1	23	149	171	149	171	0.96
3	18	0.00027	0.014	16.0	3.4	1	23	177	199	177	199	0.99
4	18	1.6e-05	0.00081	19.9	2.6	1	23	205	227	205	227	0.99
5	18	0.2	10	7.0	2.8	1	23	233	255	233	255	0.97
6	18	0.00012	0.006	17.2	3.1	1	23	261	283	261	283	0.99
7	18	0.0031	0.16	12.7	3.9	3	23	291	311	289	311	0.96
8	18	0.014	0.72	10.6	1.6	1	23	317	339	317	339	0.98
9	18	0.22	11	6.9	1.0	2	23	346	367	345	367	0.94
10	18	0.0011	0.056	14.1	2.2	1	23	373	395	373	395	0.99
11	18	0.0015	0.078	13.7	1.2	2	23	428	449	427	449	0.98
12	18	0.14	7.2	7.5	0.9	2	23	456	477	455	477	0.96
13	18	0.00073	0.037	14.7	4.3	1	23	483	505	483	505	0.99
14	18	0.11	5.5	7.8	1.3	1	23	511	533	511	533	0.98
15	18	0.00093	0.048	14.3	1.0	1	23	539	561	539	561	0.99
16	18	0.04	2.1	9.2	1.9	1	23	567	589	567	589	0.97
17	18	1e-05	0.00053	20.5	2.2	1	23	595	617	595	617	0.99
18	18	0.005	0.25	12.0	0.4	3	23	625	645	623	645	0.98

Sequence Information

Coding Sequence: ATGACCGAATTTGCAACAATTTGTtcaggaaaaattaaacaagaagtaAAATCCGATTCGAACAACGATTTAATAACGAATTCGAATCCCTCCGAAGCTGTCTGCATTGATGACGGACACCCACCGAACAATCAAAACGAAAACGCACACTCTgtcgatttaaaaattaaaggagaGCTTGCGGAAGACTGTATTAAGTCCGAGGAAATTGTCGTAAATGATTCGGTTTCGTTCAACGCTGATTCGTTTTTGTGCATCGAAGAGCGCGCTGTTCTGTACTGTTATCAATGTAATTATGCGACCAACGACAAACAAATATTAACCGATCACGTTTTCGGTCATCGTTTCAAATGTGAACAACTGAATTACACGACCCCCGATTCAATGTTAGCAACTCGCCATCGAGGTTGTGTAAAAATGGAGCGTGCCGAGGTCGGAGGCTTATTTGCATGTCACGATTGCGGTTACAGGACAACGACGAAGATTAATTTGAGACGTCACGCGCTGAAACATTCGGGCGAACGCAATTTTAAATGCGACAAATGCAATTTCAGCACGTATTCGAAATCGCTTTTGACGAGTCACAAACGAGTCCATTCCGAAGGTAAACCGTTTAAATGCAACTTATGCGATTTCAGCACCAAACGTTCGGGTAACTTAAAACAACATTTGCAGAAGCATTCGGGCGGGGGTGATTTTAAATGCGACAAGTGCGATTTCAAGACGTACTTCAAATCGTTTGCGATTAGGCACGAAAAAGTTCATTCCGTTGAACAACCTTATAAATGCGACTTGTGCGGTTTCAGCAGTAAACGCCCCGGTTGCCTAAAACAACATTTGAAACGACATACGGGTGAACGTAATGTTTGTTGCGACATGTGCGATTACAAGACATATTCTAAATCCACTTTGACGAAACACAAAAAAGTTCATTCCGAAGAAAGGCCTTACGAATgcaagttttgtagttttaccGGTAAGCGGTTTGCCGACTTATCAGTACACCTGAAGAAGCATACGGGAGAACGGAACATGagctgcgacaagtgcgattaTAAGACGTATTCTAAATCGATTTTGGCGAAACACAAATTACTTCATTGTGAAGATAAACCGTATAAATGTGATTTATGTAGTTTTAAGAGCAAACGCTTGGATTACTTAAAAGCGCACTTGCAGAAACATTCACGTGTACGCGATGAACACTACTGCGACAAGTGCGATTTTAAGACTTGCATCAAATCTATTATGACCAAGCACAAAAAAGTTCATCTTGAcgttaaatgcaatttatgtgGTTTTATCTCTAAAAGCTCTACTTACTTAAAATTACACTTGAAGAGACATACGTGCGAACGCAACGTtagctgcgacaagtgcgattTTAAAACGTACTCGAAGTCAATTTTGACGAATCACGAAAAAGTTCATACGGAAGAAAAACCATATAAGTGCAATTTATGTAGTTTCATCACAAAACGTTTGCACAACTTAAAAGCGCACTTGAAGAAACATTCGGATGAACGTAATTATAAGTGCGAAAAGTGCGATTTCAACACGTACTCCAAATCCATCGTGATCACGCACCAAAAAGTTCATTCtgaagaaaaaccatttaaatgtaatttgtgtaGTTTCGCCAGTAAACGCATGGGCGACCTGACGATACACTTGAGGAAACACATGGGCGAACGCAATTTTAGTTGCGACAAGTGCGATTTTAAGACGTACTCGAGATCGATTTTGGCGAAACACAAAAGAGTTCATTCATCTCAACGACGGTTTAAGTGCAATCTGTGTAGTTACACCAGTAGACGCAAGGATAACTTGAAAGAACACTTGCGGATCCACTCGGGTAAACGTATTTTCGGCTGCGACGAATGCGATTTCAAGGCGATCTCCAAATCTACTTTGACGGTTCACAAGAGGATTCATTCCGATGAAATCGATTCGAACGGAATTAtcaatattgaaaacaattttgattga
Protein Sequence: MTEFATICSGKIKQEVKSDSNNDLITNSNPSEAVCIDDGHPPNNQNENAHSVDLKIKGELAEDCIKSEEIVVNDSVSFNADSFLCIEERAVLYCYQCNYATNDKQILTDHVFGHRFKCEQLNYTTPDSMLATRHRGCVKMERAEVGGLFACHDCGYRTTTKINLRRHALKHSGERNFKCDKCNFSTYSKSLLTSHKRVHSEGKPFKCNLCDFSTKRSGNLKQHLQKHSGGGDFKCDKCDFKTYFKSFAIRHEKVHSVEQPYKCDLCGFSSKRPGCLKQHLKRHTGERNVCCDMCDYKTYSKSTLTKHKKVHSEERPYECKFCSFTGKRFADLSVHLKKHTGERNMSCDKCDYKTYSKSILAKHKLLHCEDKPYKCDLCSFKSKRLDYLKAHLQKHSRVRDEHYCDKCDFKTCIKSIMTKHKKVHLDVKCNLCGFISKSSTYLKLHLKRHTCERNVSCDKCDFKTYSKSILTNHEKVHTEEKPYKCNLCSFITKRLHNLKAHLKKHSDERNYKCEKCDFNTYSKSIVITHQKVHSEEKPFKCNLCSFASKRMGDLTIHLRKHMGERNFSCDKCDFKTYSRSILAKHKRVHSSQRRFKCNLCSYTSRRKDNLKEHLRIHSGKRIFGCDECDFKAISKSTLTVHKRIHSDEIDSNGIINIENNFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -