Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002556.1:111125-115346[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00083 0.042 14.5 2.3 1 23 134 156 134 156 0.98

2 15 0.0011 0.056 14.1 1.5 1 23 162 184 162 184 0.96

3 15 0.0039 0.2 12.4 6.8 1 23 190 212 190 212 0.98

4 15 0.001 0.053 14.2 1.6 3 23 220 240 218 240 0.97

5 15 0.16 8 7.3 5.2 1 23 246 268 246 268 0.98

6 15 0.025 1.3 9.8 0.3 3 23 276 296 274 296 0.97

7 15 2.3e-05 0.0012 19.4 2.6 1 23 302 324 302 324 0.98

8 15 1.7e-05 0.00089 19.8 1.9 3 23 332 352 330 352 0.98

9 15 0.00016 0.0081 16.8 6.8 1 23 358 380 358 380 0.98

10 15 0.19 9.8 7.1 1.1 2 20 387 405 386 407 0.91

11 15 0.0014 0.071 13.8 1.5 1 23 414 436 414 436 0.98

12 15 0.00069 0.035 14.8 0.7 2 23 443 464 442 464 0.96

13 15 0.00014 0.007 16.9 0.9 1 23 470 492 470 492 0.98

14 15 3e-05 0.0015 19.0 1.5 3 23 500 520 498 520 0.98

15 15 0.0022 0.11 13.2 5.1 1 23 526 548 526 548 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00083	0.042	14.5	2.3	1	23	134	156	134	156	0.98
2	15	0.0011	0.056	14.1	1.5	1	23	162	184	162	184	0.96
3	15	0.0039	0.2	12.4	6.8	1	23	190	212	190	212	0.98
4	15	0.001	0.053	14.2	1.6	3	23	220	240	218	240	0.97
5	15	0.16	8	7.3	5.2	1	23	246	268	246	268	0.98
6	15	0.025	1.3	9.8	0.3	3	23	276	296	274	296	0.97
7	15	2.3e-05	0.0012	19.4	2.6	1	23	302	324	302	324	0.98
8	15	1.7e-05	0.00089	19.8	1.9	3	23	332	352	330	352	0.98
9	15	0.00016	0.0081	16.8	6.8	1	23	358	380	358	380	0.98
10	15	0.19	9.8	7.1	1.1	2	20	387	405	386	407	0.91
11	15	0.0014	0.071	13.8	1.5	1	23	414	436	414	436	0.98
12	15	0.00069	0.035	14.8	0.7	2	23	443	464	442	464	0.96
13	15	0.00014	0.007	16.9	0.9	1	23	470	492	470	492	0.98
14	15	3e-05	0.0015	19.0	1.5	3	23	500	520	498	520	0.98
15	15	0.0022	0.11	13.2	5.1	1	23	526	548	526	548	0.98

Sequence Information

Coding Sequence: ATGTCGTGTACAATTTGTTTCGGTGAAATTAAACAAGAACCCGGATTGCAATTGAACGACGACGTAATGTTGAAAACGAACTTGTTCGAGTTGCCTTCGGAAAAAGATCTGAGCATCACCGATAACCCGGTAGCTTGCGGTAAATGCAAGGAAGAGGTTGAGAGTAATTACGAAACATGTAGCGAATTACGTCCTGTCGATAAAATCGAACAGGAATTTAACAAAGATGAAATTAAGACTGAAGGAATCATTGATTGTGTATTATTCAAGAACGACATCTCGTTAAGTACTGAAGAAAATATTCAGggtGTGACAAAACGTCTTACCATCTCTGGCAAACGGGATTATAAATCCACCTCTTTGGCGGTACGCACAAGAACACGATCGGACGAGAAACGATTTAAATGCGATTTGTGCGGATTCAATAGTAAATATTCGAATTCGTTAAAAACGCACTTGATGAAACATTCCGGCGAACAACCTTTCAGTTGTGAtaagtgcgattacaaaacgAATCGTAAAAGTTACTTGGCGTTACACACGGTAAGCCACTCGGAcgaaaaacgatttaaatgcaatttgtgcGACTTCAGTTGTAAACATTCcgattatttgaaaatacattcGATGAAACATTCCGGCGAAGAACCGTACGGTTGTAAcaagtgcgattacaaaacgtacaacaaattttatttggtgaCCCATATGAGACTTCATTCGGAAAAGAAACAGTTTAAATGCAATATGTGCGATTTCAGCGCTAAATGttctaattatttgaaaaaacatttgatgAAACATTCGGGTAAACAACCTTTCGGCTGTGACAGGTGCGATTACAAAACGATGTACAAATCTTATTTGGCGAAACACGTGATCATTCACTcgaaagaaaaacgttttaaatgcGATTTGTGCGGATTTAGCAGTAAACATTCTAGTTCATTGAGGACGCACATGATGGGGCATTCGAGCGAACGACGTTTCggctgcgacaagtgcgactacacAACTAACAggaagtttaatttaaagtcgCATATGAGAATTCATCTGGAAGAGAAActgtttaaatgcaatttgtgcGATTTCCATACGAAGCATTCTAGTAACTTAAAAAAGCATATGATAAATCATTCGGTTGAACGACTTTTATgctgcgacaagtgcgattaTAAAACCCATCAGGAAAGTGATTTGGTATCGCACACAATAGTTTGCCCGGAAGATAGACTGTTTAAATGTAATGTGTGCGATTTCAGTAGTAAATATTCGAACGCCTTAAAAGTACATTCGATGAAACATTCTGACGAAAAACCTTTgagctgcgacaaatgcgattacAGAACCCACGACAAATCTGCTTTAGTGAAACACATTATAATTCACTCGGAAGGGAAACTGTATAAATGCGATTTGTGCGAATTCGTCAGTAAATATTCAAGTTCGTTGAGAACGCACATGATGGGGCATTCGAGCGAACGACGTTTCggctgcgacaagtgcgattacacaaccaatagaaaatttaatttaaagtcgCATATAAGAGTACACGTGGAAGTGAAAcggtttaaatgtaatttgtgcgACTTTAACAGTAAACATTCGAAttctttaaagaaacatttgttGAAACATTCCGGTAAACAAACCTTTCAGGTGTGA
Protein Sequence: MSCTICFGEIKQEPGLQLNDDVMLKTNLFELPSEKDLSITDNPVACGKCKEEVESNYETCSELRPVDKIEQEFNKDEIKTEGIIDCVLFKNDISLSTEENIQGVTKRLTISGKRDYKSTSLAVRTRTRSDEKRFKCDLCGFNSKYSNSLKTHLMKHSGEQPFSCDKCDYKTNRKSYLALHTVSHSDEKRFKCNLCDFSCKHSDYLKIHSMKHSGEEPYGCNKCDYKTYNKFYLVTHMRLHSEKKQFKCNMCDFSAKCSNYLKKHLMKHSGKQPFGCDRCDYKTMYKSYLAKHVIIHSKEKRFKCDLCGFSSKHSSSLRTHMMGHSSERRFGCDKCDYTTNRKFNLKSHMRIHLEEKLFKCNLCDFHTKHSSNLKKHMINHSVERLLCCDKCDYKTHQESDLVSHTIVCPEDRLFKCNVCDFSSKYSNALKVHSMKHSDEKPLSCDKCDYRTHDKSALVKHIIIHSEGKLYKCDLCEFVSKYSSSLRTHMMGHSSERRFGCDKCDYTTNRKFNLKSHIRVHVEVKRFKCNLCDFNSKHSNSLKKHLLKHSGKQTFQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -