Ater006240.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010001119.1:8293-10065[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.017 0.84 10.4 1.5 2 23 79 100 78 100 0.96 2 15 0.0029 0.15 12.8 0.6 1 20 102 121 102 122 0.96 3 15 2 1e+02 3.8 2.7 2 23 127 148 126 148 0.96 4 15 0.021 1.1 10.1 2.2 1 21 169 189 169 190 0.94 5 15 9.6e-05 0.0049 17.4 2.8 1 23 236 258 236 258 0.98 6 15 0.012 0.59 10.9 4.3 1 23 264 286 264 286 0.97 7 15 0.0015 0.078 13.7 2.0 2 23 305 326 304 326 0.95 8 15 5.7e-05 0.0029 18.2 1.2 2 23 333 354 332 354 0.97 9 15 0.005 0.25 12.0 1.4 1 23 360 382 360 382 0.97 10 15 5.8e-07 3e-05 24.4 2.1 1 23 387 409 387 409 0.99 11 15 0.0058 0.3 11.8 0.6 1 23 416 438 416 438 0.98 12 15 0.027 1.4 9.7 5.6 1 23 444 466 444 466 0.95 13 15 0.00012 0.0063 17.1 1.7 1 23 472 494 472 494 0.98 14 15 0.0044 0.22 12.2 1.2 1 23 500 522 500 522 0.97 15 15 2.1e-05 0.0011 19.5 3.4 1 23 528 550 528 550 0.98
Sequence Information
- Coding Sequence
- atggaatTTGATTTAACAAGTgctCCATGCATGACCGACAATTCAATCGtagataacaaaattaagaCGGAAATCGATGAAACACATCAATCGTACATGCTTCACTCGTATCTTGTTAAAGACGAAGTTAAACATGAGTTTCTTGAGGATTCGATTAAGACTGAGGAAATTATCGATGAtggatatgttttttttaacgcCGACATGCCTTCGTGCATTGAAGAATGTATTTTGTATTGCGACCAATGTAATTACGGCACAAACgacaaatgcaatttaattgaTCATGTTTTTACACACCGTTTTAAATGTAATGAGTGTGATTACACAACTCCCGATAATACTATGTTAATAACTCATACACATTGCCTATCTTTAACATGTAGCGTTTGTAGTTTTACTTGTGAAGAAATTCACGTTTTGAATGAGCATATGTTTACACATAACGTTGAAGAGCTTTttataaaagaagagaaatattGGGAGCCAATAACCGAAGATTTATTTAAGTGCCATGATTGTTTTCATATCACCAATAGTAAAACTGATTTGAAACTTCATGTGGAAACCTGTTTATATGGACAAATTACTAAAGCGAAATTACATGAAGTGAAGTACGAGTATTCTACTTCAAAAGGAAAATGCAACGACCAAACGTATTCCGAACACAAGTCGATCAAACATGTACACtctggagaaaaaaaattcaaatgcagCTTATGCAATTACAGCACTAAGCGTCGAAGCGACTTAAACACACATTCGAAGATACATTCGGATGAACCTAGTTTtagctgcgacaagtgcgattaCAACACGCACACCAAAAAGCAATTGAAGAGTCACAAAATTGTCCATTCTGAACAAAAACAGTATCGAATGCAGTTTAAACATTCGGGTGAACCAAATTTAAGCTGcgataagtgcgactacaagACGTACAACAAAAGTCATTTGGCGAGTCACAAAATAGTCCATTCTGaacgaaaaacaattgaatgcggTTTCTGCGATTTTAGCACTAAACGCCGGAGTAACTTGAATGTACATTTGAAGAAACATTCGGTTGTACCTAATTTTTACTGCGACAGGTGCGATTATAAAACAGACAGCAAAAATCAGTTGGTGAAACACAAAATAATCCATTCCGAACAAATCTTTAAATGCAGTGTGTGCGATTACAACAGTACACGCCGGAGCAACTTAGAAAGACATTTGAGGACACATTCAAGTGGACCTAAAATCTTTAAATGTAGTTTGTGCGATTACAGCAGTAATTATCTGGGTACcgtaaaaatacatttgaagaTACATTCAGGTGGACCGAAATTTTGCTGCGACATGTGCGACCACAAAACGTACAGCAAAAGTCAGTTGGTGAGACATAAACTAGAACATTCCGAACAAGAactatttaaatgcaatttctgCGATTTCATCACCAAAACTCcgtattatttaaaagtacatttGAAGATACATTTGGCCGAATGtaattttagctgcgacaagtgcgactacaaaacgtACAGCAGAAATCAGCTGGCGAGTCACAAAATAGTTCATTCTGAAGAAAAATCATTTAGATGCAGTTTTTGCGATTACCGCACTAAACGTCGGagtgatttaaataaacatttaaagatACATTCAGGTGAACGTAATTTTAAGTGA
- Protein Sequence
- MEFDLTSAPCMTDNSIVDNKIKTEIDETHQSYMLHSYLVKDEVKHEFLEDSIKTEEIIDDGYVFFNADMPSCIEECILYCDQCNYGTNDKCNLIDHVFTHRFKCNECDYTTPDNTMLITHTHCLSLTCSVCSFTCEEIHVLNEHMFTHNVEELFIKEEKYWEPITEDLFKCHDCFHITNSKTDLKLHVETCLYGQITKAKLHEVKYEYSTSKGKCNDQTYSEHKSIKHVHSGEKKFKCSLCNYSTKRRSDLNTHSKIHSDEPSFSCDKCDYNTHTKKQLKSHKIVHSEQKQYRMQFKHSGEPNLSCDKCDYKTYNKSHLASHKIVHSERKTIECGFCDFSTKRRSNLNVHLKKHSVVPNFYCDRCDYKTDSKNQLVKHKIIHSEQIFKCSVCDYNSTRRSNLERHLRTHSSGPKIFKCSLCDYSSNYLGTVKIHLKIHSGGPKFCCDMCDHKTYSKSQLVRHKLEHSEQELFKCNFCDFITKTPYYLKVHLKIHLAECNFSCDKCDYKTYSRNQLASHKIVHSEEKSFRCSFCDYRTKRRSDLNKHLKIHSGERNFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -