Ater001231.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- PRDM4_1
- Assembly
- GCA_013368085.1
- Location
- JABVZW010000147.1:3463122-3468285[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.7 3.9e+02 2.0 0.2 2 23 210 231 209 231 0.74 2 13 2.4e-06 0.00012 22.5 1.4 3 23 240 261 239 261 0.96 3 13 4.4e-05 0.0023 18.5 2.9 1 23 353 375 353 375 0.98 4 13 0.019 0.97 10.2 4.4 1 21 379 399 379 400 0.94 5 13 0.00017 0.0089 16.6 4.2 1 23 408 431 408 431 0.95 6 13 0.39 20 6.1 5.2 1 21 435 455 435 456 0.94 7 13 6.3e-05 0.0032 18.0 3.3 1 23 466 488 466 488 0.98 8 13 0.005 0.25 12.0 2.7 2 23 501 522 500 522 0.96 9 13 0.001 0.053 14.2 6.3 2 23 528 549 527 550 0.94 10 13 0.00076 0.039 14.6 2.4 2 23 555 576 554 576 0.98 11 13 1.4e-07 7.2e-06 26.4 0.8 1 23 582 605 582 605 0.97 12 13 2e-05 0.001 19.6 2.0 2 23 608 629 607 629 0.98 13 13 2.8e-05 0.0014 19.1 3.6 1 23 635 658 635 658 0.97
Sequence Information
- Coding Sequence
- atgaaCGAAAACATAATATTCAGTGAACATCTTTGTGGAATATGTGGAGAAGCACACAGTTACTCTGAATGCCCCGTCTTGTTAGTTACTAAAAAGGTTCCTGATAAAATCTTACCATCGAAGGCTCGTTTGTCTTTACCCGATGTGTGCACCATAGAACGCATGGCTGATGGAAGTTACACAGTCATTGCGAACACGCTTATACAAAAGGGAACTCAATTTGGACCGCTTGAAGCacaaaaactattaactttaGATCCTACTATTATATTCCCTTTAAAGTTGTTTAATAACAATGTCGAGGATTTATCtgagtattatttaaatactacaGATGAATTTAATTGTAACTGGATAATGTTTATACCTCCTGCACAGAGTTtagaagaacaaaatttaatatgttttcaggaaaaatctaaaataatatatatgtcTTTGAAAGATATTAATGCTGGGGAGTGTTTGAAAGTCTGGTATTCACCGCATTACGCTAAACAAATGCGTAAGCAATTGCTAACCAATCAGATTTTTGAAGATACTTACGTTAATACCATAGTACCTGAACCTATTGATTTGAACAAGCTGTTGAAAAAGCAGCAGAAAATTAATGATCGCGAAAATTGGACTTGCAAGTTTTGTGGGAAGTTGGAAAAGGATATTACGTTGTTTGCTAGTCACATAATTGAGCATTATAATAAAAAGCTAACGAAGGATTGCGATGTTTGCAATAAGTCGTTCTCTACTTTGAAGAATTTGAGGAAACATATAAAATTGCAACACACCAAACCCATTATTACCAACACCATTAACTCCACCTCTTCCAACACGTCTACAGTTAACGAAAAATCTAAAGACGCAAGAGTCGGAGGTCCACTGCTGAACGATTTGTTAGCGGATAGTTTAGACAACACCAACCTGGTATTACCGAATATTGAATTAAACATGAACTCGCTCGAAAATGACGCTTTAAACTTAGCAGTCGACAATTTTCTCACCGACAACGTGAAGGAATTGGAtcactttaattttgaaatcagCGAAAGTCAAGAGCAATACGTCTGTGATATTTGTCTTAAAGTATTTACGAAACAACATTATCTTCTCCAGCATTTAAAGAAGCATACCGGAAGATTTACTTGCGGTTTCTGCTTGAAGATCTTTTGtaggaaagaaaatttaaatttgcacaaaTGCATTAATGGTGAGGTAGTTAATAGTCACAAATGTGAACAATGTGATAAATCGTTTATGATGAGAAAGCACTTGATGCGACATATATACGTAGTTCACGAGAGAAGGTACGCGTGCGAGAAGTGCAAAAAACAGTATCACACGAAAAAAGACTACAACGATCATTATTGCTTGGGTTCGTCGTGTGACCAAACTGCTTTATTCCCTTGCACTTTGtgcaacaaaaagttttttcgcGATTCTTACTTGCGCAAGCACTTAAACAGACACAATAAGAAAAATCAACAAGTgtcatctttaaatttaatttgtgaaatatgCGGCGTTTGTTGCAAGTCTCGTTCCGGGATGTATTTGCACATGAAAAATCATTCGGGACGTTCGCTCGAGTGTCACGTTTGCAACAAAACGTTTCATAGGAAGTATTTGTTGGACCAACATTTGCTTTCGCATCATGATTCAGCTGTTAAATGCGGCGAGTGCAACAAATTGTGCAAAAACGAGAAAACCCTGTCCGTACACATGCGAATGCACAAACAGACGAAGTCGTTCAAATGCGACAATTGCCCTAAAACTTTCACCCAAGCCTCAAATTTAAACGCACACGTTAACAGATTTCAcatgaaaaaatgcaaattgtgCAATAAACGTTTTTCTTCGTTAAATTTGTTGGAGGCGCATCAAAAGATGCATAccatgaaagaatttttttcatgtcCGATTTGTTCTAAATGCGTGAAGTTGAAAAGTTCTCTGAAAaggcatattaaaaaaaatcaccccGAACAGAATTCGAGCGAGCTTATATCTAACGCAGAAGTAGTGTCCGCAAATTTAGATCTCGATTCGTTAGATTGTTTAGATGTAGATAAAATGCATTCGGAAAATGTGACTCTGGAACAGATTTGCGACGCAGAAGCGCCAATTTCGGACTTGCCCAATTCACTGTCCGAAAACGATTCCAATAATTTCGATAGcattgttgataattttgagAACATCATTAACAGTTATCGGAGCGAGGAGTTGTTGATGAGCACAGAAACTccgaaaattgacaaaaatgagAAGAGGTTTTTAGATTTTACCGAACTTCAAATGGATATGGATAATACTACTTTTGATATAACTCAACCAATTGGTTCGAATCATCGAGAGGTGTGTTTGTCAATGCCTGATTTGGCTGAGAACGATCAAGAAATTATGTTagGCGATAATGCGTACATGTTGGATAACGGTACGATCGTCGAGCCGAAAGATCAGGGAAATGTTCTAGTTTACGTTTtggataaaaacttttaa
- Protein Sequence
- MNENIIFSEHLCGICGEAHSYSECPVLLVTKKVPDKILPSKARLSLPDVCTIERMADGSYTVIANTLIQKGTQFGPLEAQKLLTLDPTIIFPLKLFNNNVEDLSEYYLNTTDEFNCNWIMFIPPAQSLEEQNLICFQEKSKIIYMSLKDINAGECLKVWYSPHYAKQMRKQLLTNQIFEDTYVNTIVPEPIDLNKLLKKQQKINDRENWTCKFCGKLEKDITLFASHIIEHYNKKLTKDCDVCNKSFSTLKNLRKHIKLQHTKPIITNTINSTSSNTSTVNEKSKDARVGGPLLNDLLADSLDNTNLVLPNIELNMNSLENDALNLAVDNFLTDNVKELDHFNFEISESQEQYVCDICLKVFTKQHYLLQHLKKHTGRFTCGFCLKIFCRKENLNLHKCINGEVVNSHKCEQCDKSFMMRKHLMRHIYVVHERRYACEKCKKQYHTKKDYNDHYCLGSSCDQTALFPCTLCNKKFFRDSYLRKHLNRHNKKNQQVSSLNLICEICGVCCKSRSGMYLHMKNHSGRSLECHVCNKTFHRKYLLDQHLLSHHDSAVKCGECNKLCKNEKTLSVHMRMHKQTKSFKCDNCPKTFTQASNLNAHVNRFHMKKCKLCNKRFSSLNLLEAHQKMHTMKEFFSCPICSKCVKLKSSLKRHIKKNHPEQNSSELISNAEVVSANLDLDSLDCLDVDKMHSENVTLEQICDAEAPISDLPNSLSENDSNNFDSIVDNFENIINSYRSEELLMSTETPKIDKNEKRFLDFTELQMDMDNTTFDITQPIGSNHREVCLSMPDLAENDQEIMLGDNAYMLDNGTIVEPKDQGNVLVYVLDKNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -