Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002587.1:45577-47118[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0023 0.12 13.1 0.5 2 23 99 120 98 120 0.94

2 13 0.0026 0.13 12.9 3.4 2 21 147 166 146 167 0.94

3 13 0.0058 0.3 11.8 2.4 1 23 183 205 183 205 0.98

4 13 0.00017 0.0088 16.6 1.8 1 23 211 233 211 233 0.97

5 13 0.00064 0.033 14.8 1.4 1 23 239 261 239 261 0.98

6 13 4.6e-05 0.0023 18.5 1.1 1 23 267 289 267 289 0.97

7 13 7.7e-06 0.00039 20.9 1.2 1 23 295 317 295 317 0.99

8 13 0.00017 0.0087 16.6 1.7 1 23 323 345 323 345 0.97

9 13 4e-06 0.0002 21.8 1.8 1 23 351 373 351 373 0.99

10 13 0.007 0.36 11.6 3.8 1 23 379 402 379 402 0.93

11 13 6.6e-05 0.0034 17.9 1.4 1 23 408 430 408 430 0.98

12 13 0.0035 0.18 12.5 3.0 1 23 436 458 436 458 0.97

13 13 4.6e-05 0.0023 18.5 1.1 1 23 464 486 464 486 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0023	0.12	13.1	0.5	2	23	99	120	98	120	0.94
2	13	0.0026	0.13	12.9	3.4	2	21	147	166	146	167	0.94
3	13	0.0058	0.3	11.8	2.4	1	23	183	205	183	205	0.98
4	13	0.00017	0.0088	16.6	1.8	1	23	211	233	211	233	0.97
5	13	0.00064	0.033	14.8	1.4	1	23	239	261	239	261	0.98
6	13	4.6e-05	0.0023	18.5	1.1	1	23	267	289	267	289	0.97
7	13	7.7e-06	0.00039	20.9	1.2	1	23	295	317	295	317	0.99
8	13	0.00017	0.0087	16.6	1.7	1	23	323	345	323	345	0.97
9	13	4e-06	0.0002	21.8	1.8	1	23	351	373	351	373	0.99
10	13	0.007	0.36	11.6	3.8	1	23	379	402	379	402	0.93
11	13	6.6e-05	0.0034	17.9	1.4	1	23	408	430	408	430	0.98
12	13	0.0035	0.18	12.5	3.0	1	23	436	458	436	458	0.97
13	13	4.6e-05	0.0023	18.5	1.1	1	23	464	486	464	486	0.97

Sequence Information

Coding Sequence: atgaCCGAATCGACAACTACATGCACAATTTGTTCAGGAATAATTAAGCAAGAagtaaagtttgaaataaactATGATGTCGTAACGAACTCCAAGTTGGAATTTTCAACGGAAGATgGTCTAAGCGTCACCGAAAACCAACTCACCTGCAATAAATGCATGACCGAGATTGATAAACCACACGAATTGTATCCGAATATtgttaaaaacgaaataaaagaagaattcgACCATGATTACATCGAGACTGAACGTCCTTTGTGTATTGAAGAGAACATTTCGGTAAATATTCTGTATTGTTATTACTGCAATTACGCCACCAATGACAAACAAAATCTGACGGATCATATTTTCGGTCATCGTTTCAAATGCGATCGCACAActtctttattatcaattacgAATGAGGAGTTACCGCAAATAAACGAACATTTACTGAAATGTCACGATTgtgtttataaaacaaacagcaaaagtagtttaaaacaTCACATGACGAGGTGTTTAAAAAGAAACCGTAAAACCGCACACACTGGAGAGAAAAGATTCAAATGCgatttgtgcaattttcaaaataagaattcgagttatttaaaaatccacATGCTTAAACACGCTGGTGAGCATCTCTTTTTCTGTGACGATTGCGACTACAAAACGTACACCAAAAGCCAGTTGATACAACATAAACAAGTTCATTCGGACGTAAAACCATTCGAGTGCAGTTTGTGTGATTATACTAGTAAACGTTTGAGTCGATTGAAAGAACATGTGAATAAACATTCGGGTGAGCATCGTTATGTctgcgacaagtgcgactacaaaacgtACACCAAAAGTAATTTAACGATTCACAAAATAGTTCATTCGGAGAAGAAACCGTTTAAGTGCGATGTGTGCGATTATACCAGTAAACGTTTGGGTCAATTAAAAGAACACATGAACAAACATTCGGGGGCGCATAATTTTGTCTGCAACAAGTGTGATTACACAACGcataacaaaagtaatttagCGATTCACAAAATAGTTCACTTAGGAGAAAAACCATTTAAGTGCGATGTGTGTGATTATACTAGTAAACGTTCGAGTCAATTGAAAGGGCACATGAATAAGCATTCGGACGCACACAATTTTGTCTGCGATAAATGCGACTATAGAACGTACTCCAAATTCACATTGAAAAGgcacaaaacaaataatcatttgGGCGATTATAAATTTAGCTGCGATAAGTGCGAATACAAAACGAGCTCTAAATCGGCGTTGACACGACACGAAAAAGTTCATTCCGAACATAAACCATTTAGCTGCAGTTCGTGCGATTACACCAGTAAATACTCGTTCAACTTAAAAGTGCACTTGTATAAACATTCGGGTGAGCATCGTTATGTctgcgacaagtgcgactacaaaacgtACACCAAAAGTAATTTAACGATTCACAAAATAGTTCATTCGGAAGACAAACCGTTCAAAAGTAATTTGTGA
Protein Sequence: MTESTTTCTICSGIIKQEVKFEINYDVVTNSKLEFSTEDGLSVTENQLTCNKCMTEIDKPHELYPNIVKNEIKEEFDHDYIETERPLCIEENISVNILYCYYCNYATNDKQNLTDHIFGHRFKCDRTTSLLSITNEELPQINEHLLKCHDCVYKTNSKSSLKHHMTRCLKRNRKTAHTGEKRFKCDLCNFQNKNSSYLKIHMLKHAGEHLFFCDDCDYKTYTKSQLIQHKQVHSDVKPFECSLCDYTSKRLSRLKEHVNKHSGEHRYVCDKCDYKTYTKSNLTIHKIVHSEKKPFKCDVCDYTSKRLGQLKEHMNKHSGAHNFVCNKCDYTTHNKSNLAIHKIVHLGEKPFKCDVCDYTSKRSSQLKGHMNKHSDAHNFVCDKCDYRTYSKFTLKRHKTNNHLGDYKFSCDKCEYKTSSKSALTRHEKVHSEHKPFSCSSCDYTSKYSFNLKVHLYKHSGEHRYVCDKCDYKTYTKSNLTIHKIVHSEDKPFKSNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -