Ater010929.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002424.1:362593-364652[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.032 1.6 9.5 2.4 1 23 93 115 93 115 0.98 2 19 0.14 7.4 7.4 1.4 1 23 117 139 117 139 0.98 3 19 0.0013 0.066 13.9 1.0 2 23 164 185 163 185 0.97 4 19 0.0083 0.42 11.3 1.1 1 23 197 219 197 219 0.97 5 19 0.00097 0.05 14.3 4.8 1 23 225 247 225 247 0.98 6 19 0.0027 0.14 12.9 1.7 1 23 253 275 253 275 0.95 7 19 0.00058 0.029 15.0 7.4 1 23 281 303 281 303 0.99 8 19 0.0018 0.094 13.4 2.8 3 23 311 331 309 331 0.96 9 19 0.0098 0.5 11.1 2.1 2 23 338 359 337 359 0.96 10 19 0.00081 0.041 14.5 1.5 1 23 365 387 365 387 0.97 11 19 0.015 0.78 10.5 7.7 1 23 393 415 393 415 0.98 12 19 0.0056 0.28 11.9 4.2 1 23 421 443 421 443 0.96 13 19 0.00039 0.02 15.5 3.9 1 23 449 471 449 471 0.99 14 19 0.00073 0.037 14.7 2.4 1 23 477 499 477 499 0.97 15 19 6.1e-05 0.0031 18.1 3.7 1 23 504 526 504 526 0.98 16 19 0.0023 0.11 13.1 6.2 1 23 553 575 553 575 0.98 17 19 0.00092 0.047 14.4 3.3 1 23 581 603 581 603 0.95 18 19 0.00057 0.029 15.0 4.5 1 23 609 631 609 631 0.98 19 19 0.032 1.6 9.5 5.0 1 23 637 659 637 659 0.97
Sequence Information
- Coding Sequence
- ATGTCCGAAATCACAGCAACGACGTGCAGAATTTGCTTAGGACAAATTAAGCAAGAAACAGAATTTGAACTTAACGAGACGAGATTAAAATCAGAGGTCCTGTCCGAACAAgagTTGAGCATCACAGACAACCCAGTTGCGTGCATCAAATGCAGGGTGGAGATCGATGTAGATCACCTATTTGTTAAAGAGGAAATCAAACAGGAATTTGTCGAAGAAGGAATTAAGACCGATGCGTTACTGAACATTGAAGAAAACATTCGggtaaaaagtttatattattgtGCCCAATGCAGTTACGGCACTAAtcacaaaaaagatttaatacaACACGTTTTCACACACCGTTTTAAATGTAATCAGTGCAGTTACTCGAcccttgataattttttattaataaatcacaaacaaatacACTTCAAGATCGAAATTGATGATATAAGTGAAGGGAATTGTCGGAAGCTTTCGTTAACGAATAACCGTTTGTTAGAATGCCACGATTGTGGTTATCAGGCTACCAGCAAAATTACTTTGGAACTTCATACGAAGACTCATAAAAAATTCGAACTTTCAGACGATGTGAGACCTTTCAGTTGTGATGAATGCgattataaaactaatataaaatttcttttgcaacagCATCAAACtattcattttaaagaaaaactatttaaatgtgGTTTGTGCGATTACAGTTGCAACttttcatttaacttaaaaactcaCTTAATGAAACATTCGGGTGAACAACCTTTCGCTTGTGACAAGTGCTCCTTCAGAACTAGTAGAAAAGGTAGTTTACAGAAACACAAAATTCTtcactttaaagaaaaaccatttaaatgtagtttatgCGATTACAGTTGCAATActtcattccatttaaaaaatcatctgATGAAACATACAGGTGAAAAACCTTTCGGTTGTGACAAATGCGATtataaaactaatagaaaatcTCATTTGCAACAACACGAAACGATTCATTTCAAAGAGAAATCATTGAAATGTAGTTTGTGCAATTACAGTTGCAACCTTTCATATCTTTTAAAAGCTCACTTGGTAAAACATTCAGGGGAAAAACCTTTCAGTTGTGAAAAATGCGATTATAAAACCAATTCAAAATCCGTTTTGCAACGACACAAAATTATCCATTCTgaagaaaaatcatttaaatgtagtttatgCGATTACAGTTGTAGTTTTTCACATCGATTAAAAACGCACTTGATGAAACATACAGGTGAAACACCTTTCTGTTGTGACAAATGCGattataaaactaatacaaaatatctTCTGCAACAACACAAAATTATCCATTCCgatgaaaaatcatttaaatgtagtttgtgCGATTACAGTTGCAACttttcttatcttttaaaaGCGCACTTGATGAAACATTCAGGAGAGAAACCTTTTAGTTGTGACAAATGCGATtataaaagtaatagaaaatctCTTTTGCAACAACATAAAACTATCCattccaaagaaaaatttaaatgtaatatgtGCGATTACAGTTGTAACTTTccatattctttaaaaattcacatGTTAAAACATCCATCTTCTAGTTGTGATAATTCAGATTATAAAACTGACACGAAACCGCATAAAAGTGTTCATTCTAAAGAAAAACCacataaatgtaatttgtgcGGATACTGTTCCAACTTTTCACAGGATTTGAAACGGCACTTGATGAAACATTCGGGCGAACAACCTTTCAGTTGTGATAATTGCGAttataaaactaacaaaaaatctCATTTGCAACGGCACAGTGCCATCCACTTtcaagaaaaaccatttaaatgtagtttgtgCGATTACAGATGCAACTTTTCATATTCATTAAAAGTGCATATGATAAAACATTCTGGTAAACGAACTTTCAGTTGTGACGAATGTTCCtacaaaaccaataaaaaaactcatttcCAGCAGCACAGACTTATCCACGTTgacaaaaaaccatttaaatgtagTTAA
- Protein Sequence
- MSEITATTCRICLGQIKQETEFELNETRLKSEVLSEQELSITDNPVACIKCRVEIDVDHLFVKEEIKQEFVEEGIKTDALLNIEENIRVKSLYYCAQCSYGTNHKKDLIQHVFTHRFKCNQCSYSTLDNFLLINHKQIHFKIEIDDISEGNCRKLSLTNNRLLECHDCGYQATSKITLELHTKTHKKFELSDDVRPFSCDECDYKTNIKFLLQQHQTIHFKEKLFKCGLCDYSCNFSFNLKTHLMKHSGEQPFACDKCSFRTSRKGSLQKHKILHFKEKPFKCSLCDYSCNTSFHLKNHLMKHTGEKPFGCDKCDYKTNRKSHLQQHETIHFKEKSLKCSLCNYSCNLSYLLKAHLVKHSGEKPFSCEKCDYKTNSKSVLQRHKIIHSEEKSFKCSLCDYSCSFSHRLKTHLMKHTGETPFCCDKCDYKTNTKYLLQQHKIIHSDEKSFKCSLCDYSCNFSYLLKAHLMKHSGEKPFSCDKCDYKSNRKSLLQQHKTIHSKEKFKCNMCDYSCNFPYSLKIHMLKHPSSSCDNSDYKTDTKPHKSVHSKEKPHKCNLCGYCSNFSQDLKRHLMKHSGEQPFSCDNCDYKTNKKSHLQRHSAIHFQEKPFKCSLCDYRCNFSYSLKVHMIKHSGKRTFSCDECSYKTNKKTHFQQHRLIHVDKKPFKCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -