Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002826.1:58833-61801[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.013 0.67 10.7 4.6 1 23 115 137 115 137 0.97

2 26 0.19 9.5 7.1 2.7 1 23 139 161 139 161 0.98

3 26 0.25 13 6.7 0.1 2 19 167 184 166 184 0.96

4 26 0.018 0.9 10.3 4.2 1 23 302 324 302 324 0.97

5 26 0.072 3.7 8.4 2.7 1 23 326 348 326 348 0.98

6 26 0.0067 0.34 11.6 0.2 2 23 354 375 353 375 0.97

7 26 0.39 20 6.1 4.5 1 23 379 401 379 401 0.97

8 26 0.0092 0.47 11.2 0.3 1 19 407 425 407 429 0.93

9 26 0.0056 0.29 11.9 11.7 1 23 435 457 435 457 0.98

10 26 0.0047 0.24 12.1 5.5 1 23 463 485 463 485 0.98

11 26 0.0007 0.036 14.7 4.0 1 23 491 513 491 513 0.98

12 26 0.012 0.59 10.9 7.3 1 23 519 541 519 541 0.97

13 26 0.0022 0.11 13.2 4.5 1 23 547 569 547 569 0.98

14 26 0.00057 0.029 15.0 2.9 1 23 575 597 575 597 0.98

15 26 0.0017 0.087 13.5 9.9 1 23 603 625 603 625 0.98

16 26 0.00045 0.023 15.3 3.3 1 23 631 653 631 653 0.97

17 26 0.014 0.73 10.6 7.2 1 23 659 681 659 681 0.99

18 26 0.00079 0.04 14.6 4.4 3 23 689 709 687 709 0.98

19 26 0.0017 0.085 13.5 6.5 1 23 715 737 715 737 0.98

20 26 0.067 3.4 8.5 3.3 2 23 744 765 743 765 0.97

21 26 0.0015 0.076 13.7 2.4 1 23 771 793 771 793 0.98

22 26 0.044 2.2 9.1 5.7 1 23 799 821 799 821 0.98

23 26 1.5e-05 0.00077 20.0 2.1 1 23 827 849 827 849 0.98

24 26 0.045 2.3 9.0 5.3 1 23 855 878 855 878 0.97

25 26 0.00084 0.043 14.5 2.0 1 23 884 906 884 906 0.98

26 26 0.0016 0.081 13.6 0.7 1 23 912 934 912 934 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.013	0.67	10.7	4.6	1	23	115	137	115	137	0.97
2	26	0.19	9.5	7.1	2.7	1	23	139	161	139	161	0.98
3	26	0.25	13	6.7	0.1	2	19	167	184	166	184	0.96
4	26	0.018	0.9	10.3	4.2	1	23	302	324	302	324	0.97
5	26	0.072	3.7	8.4	2.7	1	23	326	348	326	348	0.98
6	26	0.0067	0.34	11.6	0.2	2	23	354	375	353	375	0.97
7	26	0.39	20	6.1	4.5	1	23	379	401	379	401	0.97
8	26	0.0092	0.47	11.2	0.3	1	19	407	425	407	429	0.93
9	26	0.0056	0.29	11.9	11.7	1	23	435	457	435	457	0.98
10	26	0.0047	0.24	12.1	5.5	1	23	463	485	463	485	0.98
11	26	0.0007	0.036	14.7	4.0	1	23	491	513	491	513	0.98
12	26	0.012	0.59	10.9	7.3	1	23	519	541	519	541	0.97
13	26	0.0022	0.11	13.2	4.5	1	23	547	569	547	569	0.98
14	26	0.00057	0.029	15.0	2.9	1	23	575	597	575	597	0.98
15	26	0.0017	0.087	13.5	9.9	1	23	603	625	603	625	0.98
16	26	0.00045	0.023	15.3	3.3	1	23	631	653	631	653	0.97
17	26	0.014	0.73	10.6	7.2	1	23	659	681	659	681	0.99
18	26	0.00079	0.04	14.6	4.4	3	23	689	709	687	709	0.98
19	26	0.0017	0.085	13.5	6.5	1	23	715	737	715	737	0.98
20	26	0.067	3.4	8.5	3.3	2	23	744	765	743	765	0.97
21	26	0.0015	0.076	13.7	2.4	1	23	771	793	771	793	0.98
22	26	0.044	2.2	9.1	5.7	1	23	799	821	799	821	0.98
23	26	1.5e-05	0.00077	20.0	2.1	1	23	827	849	827	849	0.98
24	26	0.045	2.3	9.0	5.3	1	23	855	878	855	878	0.97
25	26	0.00084	0.043	14.5	2.0	1	23	884	906	884	906	0.98
26	26	0.0016	0.081	13.6	0.7	1	23	912	934	912	934	0.98

Sequence Information

Coding Sequence: ATGGCAGAAATCACAATTACATGCCAAACgtgtttcaaacaaattaacaacGAAAACCAACTTCATGTCGTAAGCTACGATCCGACACCGCACTCGAACTCTCCTGCGAAAACGGATTTCACCGTTGACGAGAATCTACTTGCGTGCAACGAATGCAAGCACGAAATTGACGAAGCGttaactgaaaacaaaaatattttacaggcTGCATTATTTTCGAGTAGTAACGAAGGAACGGTTAAAGACGAGTTTATCGCAAAAAATGCCGAAATCATTAAAGAAGAACATGTCTTATTCAACACGGACCTGTTCGCATACATTGAAGACGAATCGAATACTTTATACCACTGTTACCAGTGTAATTATGCCGTTAGCGATAAACAAAGTTTAACGGATCATATGTGTAATCACCGTTTTAAATGTTATCTATGCAGTTACACTACATTTGATAATTCCTCATTCGACGTACATAAACAAATGCACGATGAATACGTAGTCAAGTGTTACAATTGCGGTTATGAAACTAAAGACAAGATAACTTTACAAATTCATtgcATCATAATGGCAGAAATCACAATTACATGCCAAACgtgtttcaaacaaattaacaacGAAAACCAACTTCATGTCGTAAGCTACGATCCGACACCGCACTCGAACTCTCCTGCGAAAACGGATTTCACCGTTGACGAGAATCTACTTGCGTGCAACGAATGCAAGCACGAAATTGACGAAGCGttaactgaaaacaaaaatattttacaggcTGCATTATTTTCGAGTAGCAATGAAGGAACGGTTAAAGACGAGTTTATCGCAAAAAATGCCGAAATCATTAAAGAAGAACATGTCTTATTCAACACGGACCTGTTCGCGTACATTGAAGACGAATCGAATACTTTATACCACTGTTACCAGTGTAATTATGCCGTTAGCGATAAACAAAGTTTAATGGATCATATGTGTAATCACCGTTTTAAATGTTATCTATGTAATTACACTACATTTGATAATTCGTCATTCGACGTGCATAAACAAATGCACGATGAATACGTAGTCAAGTGTTACAATTGCGGTTATGAAACTAAAGACAAGATAACTTTACAAATTCATGTGTTAAgccataaaaaattgtttaattgcaaTTTCTGCGATTACAGCAGTAAGAAGTCGGAAATCTTACGAAAGCATTTGCATAGACACTGTAACAAGCGGAGTTTCACCTGTAATAAATGCGATTACGTAAGTCGCAACAAAATCGGTTTGATTAAACACGATTTGATTCACAACGaggaaaaaccgtttaaatgtaaattttgcgATTATTGTTGTAAACGATCGGGTCAATTGAAAAAGCATCTGCACAAGCACTCCGACGTATGGCCTTTCATATGCGATAAGTGCGATTACAAATGTTATGATAAATTTTCTCTGACTCAACACAAAAGAAGTCACTCCGgagaaaaaccttttaaatgtaatttttgcgaCTATTGCAGTAAAACGCTTGGAAATTTAAGGAACCATTTGTACGTACATTCTTCCGAACGGCCGTTCTGCTGCGACGAGTGCGACCATAAATGTGTTAACAAAGCTGCTTTGATGAAACACAAAAGGAAGCatgtaaaagaaaaaccatttaaatgcgAAACGTGCAGTTATTCCACCTACCATTCGGGTAATTTGAAAACGCATATTTACAAACATACCGGTGAGCGACCTTTTAGTTGTGAcgaatgcgattacaaaacttcCCACAGCGTTGCTTTGTTTCGGCACAAACAAACACACACCGACcataaaccgtttaaatgtcATATTTGCAGTTATTGCAGTAGACGAGCAAGTCATTTGAAACgtcatttgtttaaacattcTGGTGATTGGCCTTTTAGttgtgataagtgcgactatAAATGTTCGGACAACGCTACTCTGACCCGGCACGAAACAACACACACTCAAGAAAAGccgtttaaatgtaacattTGCGAACATTGTAGTCGTACGCATACACTTTTGAAAGTCCATTTGCTCACACACTCCGACGAACGACCTTTCGGCTGCGATAAGTGCGATTACAAATGTCGTAGCAAATCTAACTTGATTTTGCACAAACGAAAGCATACTCAAGAGAAACCGTTTAAGTGCAATTTTTGCGACTATTGCAGCCGTTCAGCACCAAACTTAAAGCGGCACTTGCACAAACACTCCGACGAGCGACCCGTcagctgcgacaagtgcgattaCAAATGTCACGACAAAATTGCCTTGGCTCGACACAATCAAACGCACAATCCAggaaaaccatttaaatgtaatCTTTGCGATTATGGCGGTAAGCGATCGCAACAATTGAAATATCACATGTACAAACATTCAGGCGAGTGGCCGTACAAATGTGATAAGTGCGACTTCAAATCTTGTAAGAAAAATGCCCTCACTCGCCACTCGACAACGCACACCcaagaaaaaccatttaagtGTAAAATATGTGATTATTCTTCCAGGCGATCAGATCAATTGAAAGAGCATTTGTACACGCACTCGGAAGATCGACCTTTCAGCTGTGATAAGTGTGCCTACAAGTGTCACAATCAATCCACTTTGGATCGTCACATTAAAAGAGTGCACCCCTTAGAGAAACggtttaaatgtagtttttgtgattattgtgGTAGTACAGCGGGGGGATTAAAAAGTCATATGTACATGCACACGAATGAGCGACCTTTTAAATGTGATAACTGCGAGTACAAAGCTCgttccaaaattttattgattcgACACTTAAAAATTCATTCCACTTCAGTGTAA
Protein Sequence: MAEITITCQTCFKQINNENQLHVVSYDPTPHSNSPAKTDFTVDENLLACNECKHEIDEALTENKNILQAALFSSSNEGTVKDEFIAKNAEIIKEEHVLFNTDLFAYIEDESNTLYHCYQCNYAVSDKQSLTDHMCNHRFKCYLCSYTTFDNSSFDVHKQMHDEYVVKCYNCGYETKDKITLQIHCIIMAEITITCQTCFKQINNENQLHVVSYDPTPHSNSPAKTDFTVDENLLACNECKHEIDEALTENKNILQAALFSSSNEGTVKDEFIAKNAEIIKEEHVLFNTDLFAYIEDESNTLYHCYQCNYAVSDKQSLMDHMCNHRFKCYLCNYTTFDNSSFDVHKQMHDEYVVKCYNCGYETKDKITLQIHVLSHKKLFNCNFCDYSSKKSEILRKHLHRHCNKRSFTCNKCDYVSRNKIGLIKHDLIHNEEKPFKCKFCDYCCKRSGQLKKHLHKHSDVWPFICDKCDYKCYDKFSLTQHKRSHSGEKPFKCNFCDYCSKTLGNLRNHLYVHSSERPFCCDECDHKCVNKAALMKHKRKHVKEKPFKCETCSYSTYHSGNLKTHIYKHTGERPFSCDECDYKTSHSVALFRHKQTHTDHKPFKCHICSYCSRRASHLKRHLFKHSGDWPFSCDKCDYKCSDNATLTRHETTHTQEKPFKCNICEHCSRTHTLLKVHLLTHSDERPFGCDKCDYKCRSKSNLILHKRKHTQEKPFKCNFCDYCSRSAPNLKRHLHKHSDERPVSCDKCDYKCHDKIALARHNQTHNPGKPFKCNLCDYGGKRSQQLKYHMYKHSGEWPYKCDKCDFKSCKKNALTRHSTTHTQEKPFKCKICDYSSRRSDQLKEHLYTHSEDRPFSCDKCAYKCHNQSTLDRHIKRVHPLEKRFKCSFCDYCGSTAGGLKSHMYMHTNERPFKCDNCEYKARSKILLIRHLKIHSTSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -