Basic Information

Insect: Abscondita terminalis
Gene Symbol: ham_2
Assembly: GCA_013368085.1
Location: JABVZW010001329.1:970511-1070021[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0069 0.35 11.6 0.1 2 23 263 285 262 285 0.95

2 9 0.0017 0.085 13.5 3.1 1 23 292 315 292 315 0.94

3 9 5.6e-08 2.8e-06 27.6 4.2 1 23 321 343 321 344 0.96

4 9 2e-06 0.0001 22.7 1.7 1 23 350 372 350 372 0.95

5 9 4.9e-05 0.0025 18.4 5.0 1 23 378 400 378 400 0.99

6 9 0.00098 0.05 14.3 0.7 2 21 408 427 407 428 0.95

7 9 1.7e-08 8.6e-07 29.3 0.7 1 23 751 773 751 773 0.98

8 9 2.2e-06 0.00011 22.6 1.6 1 23 779 802 779 802 0.97

9 9 1.7e-05 0.00087 19.8 3.4 1 23 808 830 808 830 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0069	0.35	11.6	0.1	2	23	263	285	262	285	0.95
2	9	0.0017	0.085	13.5	3.1	1	23	292	315	292	315	0.94
3	9	5.6e-08	2.8e-06	27.6	4.2	1	23	321	343	321	344	0.96
4	9	2e-06	0.0001	22.7	1.7	1	23	350	372	350	372	0.95
5	9	4.9e-05	0.0025	18.4	5.0	1	23	378	400	378	400	0.99
6	9	0.00098	0.05	14.3	0.7	2	21	408	427	407	428	0.95
7	9	1.7e-08	8.6e-07	29.3	0.7	1	23	751	773	751	773	0.98
8	9	2.2e-06	0.00011	22.6	1.6	1	23	779	802	779	802	0.97
9	9	1.7e-05	0.00087	19.8	3.4	1	23	808	830	808	830	0.99

Sequence Information

Coding Sequence: ATGCGATCCAAATCGGTTGCGAGAAGAGTCACGGCTCAAGaagGAAGCGAGGACGAACTCGAGACGTCAACCCAAAATTTGCAACTATCAGGCGACGACAATTCTATGGAACCGACGAACATGGTGCCACCTCAACACGACGCGGCCCCCTCACGTCTTCTATCAACAGATCAGACCAACAACAACCGAgacgaaaacgaaaaaaatccgATATTATCGATTAAATCGCCGGatcttttatacaaaaatgaaaatttttttaacggatttaaaatttgtgactTTCCTCCGCAAGTTGCTTTAAATAATAACGTGTTGCCCGTTGAAGTGGAGTATCGCGATTCTGGAATTTTTGCTGTTAGTGTCGTTCCGAAAGGTACCAGATACGGTCCGTTCCAAGGTAAATGGGCAGGCATACCTCAAGATCCGAAATACGCATGGGAGGTATTAGCCGGTTCGGGTATAAGAGGTTGGTTGGATGGTTCCTTGGAACCGCATAATTggttaaaattgattaacagCACACCGAAGAGGTCTTCGTCGAATTTACGTCATTTTCTTCAGAGCGGACAGCATTTTGCTTCGCAGTTATGGTACGAAACTTGCGTCGATATTCCGATAGGTACCGAATTGGTGTTGGGATCGAAGGAGCCGTTGGACTTGCAGGATATGTTCGGTGATCCGAACGCGTCTATAGACGATTTCGCCAGTAGAGAAACAGGATCGCAACACAGTGGTACTGCAGAAAACGATCGAGAGGATGAGAGCGAAGACGAGTCCGAAACACGTTGTTCCGTATGCGATCAACCTTTTGCAGATTTAGATAAattagACGAGCATCTAATTGTGAAACACAATTATCGAAAAGACGAGTTTCGTTGCGATCTTTGCCCAAAATCGTACTCGCACAGGCCTTGCCTTTTGAAACATCGTGCTTTAGTACACGGCGAGACGAGGAAGTATCATTGCGAAAATTGCACCAAAGTTTTCACAGATCCTAGCAACCTTCAACGGCATATAAGAACCCACCACGTAGGCGCGCGATCGCACGCGTGTCCCGAATGCGGCAAAACTTTCGCAACCTCCTCGGGATTGAAACAACACACACATATCCACTCTTCCGTAAAACCATTTCAATGCGAGGTCTGTTTTAAGGCCTACACGCAATTCTCAAATTTGTGTCGTCACAAACGGATGCACGCCGACTGTCGCATGCAGATCAAGTGTGTTAAATGCGGACAGTCGTTTTCAACTGTAACCTCTTTATCAAAACATAAGCGTTTTTGTGATACGACTTCGTCAGCACCGCCGATGAGCAATCCACCATCTCTGCCGATGAATCCACTGGCTAACAACAATCCGTTCTCTATGTACAGACCACCAGCGGCTTGTCATTTGCCTTTTTTCCCCAGCCATTTCCCACCGTACCCGCCGATCTTTCCACCAACAGGTCCACCCCCCTCCTTTATAAATCCTCTGCTATTCAACCAccttccaaaattaaaaatggaagatCACATACCGACGAAACGAATGCGTACGATTAGTCCCGAAAGAACGTCCCCGTTAAAGGATCGGATTACGCCACCGCAATTACCGAGCGTAACCGCCAAGATAAGTCCACCGACTGCCGAAGAGGCTTGCTCCAATTTAATGCCATCGCCCGCCAGACCACCGACCAGTACAGTTTTTAACAATCCGAGGGACCAAATCTCCAAAGACGTCAACGGAAGCGACGATTTCGACTTTCCACGCGACCTAACGAAAACTAACGAAGAACTTTCTAGGAGCGTGTCTAAATCGAGTAGCAGCGACGAAGGCGATCAACCATTAGATTTGAGCGTTGTTAAAAAATCCCCGATTATTTCGATCGACGTCGAAGAACCGGCGAGACAACCCTCGCGCGATGTAACACCAAAAAAACTGGAGGAAGATCGAATCGAAGTGGTAGACGTCGACGATCATAATAACATCAAAAACGAACACAAAAATTCCGCGCCGCAAATGGCCTACCCTCGTCCAATACAtccaatatttttagaaatgtatCGACCGAATTTTCATTCGTTACAACCTCAAGCTAACGATAGATTGTTACATCCGTTCGGGCCACGACACTTCCCATTTATAAATCCTTTGCAGCACGCGAGAAGTTTCGATTTGTTACGTccgaatttgcaaaattttggtGGCGTTAAGCCTTATCACGACGTGATTCAACATCAAACGCAAACTAAAATGAAGGATCGTTACGCATGCAAGTTTTGCGGGAAGGTTTTTCCAAGATCTGCGAATTTAACCAGACATTTGCGAACGCACACTGGTGAGCAACCGTATAAATGTAGATACTGTGAACGTTCGTTCAGCATCTCCAGCAATCTACAGAGACACGTGAGGAACATTCATAATAAGGAGAAGCCTTTCAAGTGTCCGTTATGCGAGAGGTGTTTCGGGCAACAGACGAATTTGGATAGACATCTTAAGAAACACGAGCAAGACGATGGTAACGGCGGAACGGTTATCGCAGATTCGCCTGGCAGCAGTAATGAGAACGAAAGAGAAGAAGGATATTTTGACGAAATACGTAGTTTCATGGGTAAAGTGACTTATTCGGGTACAAACTTTAACCAAACCCAGTTGTACAATCCACAACACAACCACACGATGGATGttagtaaagaagaagaagattctGAAACCTACTCGGAAGGCACGTCGCCTATCGAAGATTACTCGAAAACTAAGTTGGACACCGGTGGGACGAAACTTCAAGTCAAGGAAGAAAAACTGAACAACAACGATCGAAGTTTAGAAATTTCGACTTAG
Protein Sequence: MRSKSVARRVTAQEGSEDELETSTQNLQLSGDDNSMEPTNMVPPQHDAAPSRLLSTDQTNNNRDENEKNPILSIKSPDLLYKNENFFNGFKICDFPPQVALNNNVLPVEVEYRDSGIFAVSVVPKGTRYGPFQGKWAGIPQDPKYAWEVLAGSGIRGWLDGSLEPHNWLKLINSTPKRSSSNLRHFLQSGQHFASQLWYETCVDIPIGTELVLGSKEPLDLQDMFGDPNASIDDFASRETGSQHSGTAENDREDESEDESETRCSVCDQPFADLDKLDEHLIVKHNYRKDEFRCDLCPKSYSHRPCLLKHRALVHGETRKYHCENCTKVFTDPSNLQRHIRTHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDTTSSAPPMSNPPSLPMNPLANNNPFSMYRPPAACHLPFFPSHFPPYPPIFPPTGPPPSFINPLLFNHLPKLKMEDHIPTKRMRTISPERTSPLKDRITPPQLPSVTAKISPPTAEEACSNLMPSPARPPTSTVFNNPRDQISKDVNGSDDFDFPRDLTKTNEELSRSVSKSSSSDEGDQPLDLSVVKKSPIISIDVEEPARQPSRDVTPKKLEEDRIEVVDVDDHNNIKNEHKNSAPQMAYPRPIHPIFLEMYRPNFHSLQPQANDRLLHPFGPRHFPFINPLQHARSFDLLRPNLQNFGGVKPYHDVIQHQTQTKMKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHEQDDGNGGTVIADSPGSSNENEREEGYFDEIRSFMGKVTYSGTNFNQTQLYNPQHNHTMDVSKEEEDSETYSEGTSPIEDYSKTKLDTGGTKLQVKEEKLNNNDRSLEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00153824;
90% Identity: iTF_00003221;
80% Identity: -