Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002542.1:154752-156860[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00041 0.021 15.5 1.1 1 23 147 169 147 169 0.98

2 19 0.00012 0.0061 17.1 3.0 1 23 175 197 175 197 0.99

3 19 0.007 0.36 11.6 0.4 1 23 207 229 207 229 0.98

4 19 0.00048 0.025 15.2 3.3 1 23 233 255 233 255 0.98

5 19 0.0067 0.34 11.6 1.9 1 23 261 283 261 283 0.97

6 19 0.013 0.65 10.8 0.5 3 23 295 315 293 315 0.98

7 19 0.0032 0.17 12.6 2.8 1 23 319 341 319 341 0.98

8 19 0.00024 0.012 16.2 4.0 1 23 347 369 347 369 0.99

9 19 3.6e-05 0.0019 18.8 1.6 1 23 379 401 379 401 0.98

10 19 0.066 3.4 8.5 4.4 1 23 405 427 405 427 0.98

11 19 0.00046 0.023 15.3 3.5 1 23 433 455 433 455 0.98

12 19 9e-05 0.0046 17.5 0.9 1 23 465 487 465 487 0.98

13 19 1.2 59 4.6 0.1 1 23 493 515 493 515 0.96

14 19 0.0015 0.078 13.7 7.3 1 23 520 542 520 542 0.98

15 19 0.37 19 6.2 0.8 1 23 548 570 548 570 0.96

16 19 0.0038 0.19 12.4 1.9 1 23 576 598 576 598 0.99

17 19 0.0056 0.29 11.9 4.8 1 23 604 626 604 626 0.98

18 19 0.0036 0.18 12.5 4.4 1 23 632 654 632 654 0.97

19 19 2.6e-05 0.0013 19.2 1.1 2 23 661 682 660 682 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00041	0.021	15.5	1.1	1	23	147	169	147	169	0.98
2	19	0.00012	0.0061	17.1	3.0	1	23	175	197	175	197	0.99
3	19	0.007	0.36	11.6	0.4	1	23	207	229	207	229	0.98
4	19	0.00048	0.025	15.2	3.3	1	23	233	255	233	255	0.98
5	19	0.0067	0.34	11.6	1.9	1	23	261	283	261	283	0.97
6	19	0.013	0.65	10.8	0.5	3	23	295	315	293	315	0.98
7	19	0.0032	0.17	12.6	2.8	1	23	319	341	319	341	0.98
8	19	0.00024	0.012	16.2	4.0	1	23	347	369	347	369	0.99
9	19	3.6e-05	0.0019	18.8	1.6	1	23	379	401	379	401	0.98
10	19	0.066	3.4	8.5	4.4	1	23	405	427	405	427	0.98
11	19	0.00046	0.023	15.3	3.5	1	23	433	455	433	455	0.98
12	19	9e-05	0.0046	17.5	0.9	1	23	465	487	465	487	0.98
13	19	1.2	59	4.6	0.1	1	23	493	515	493	515	0.96
14	19	0.0015	0.078	13.7	7.3	1	23	520	542	520	542	0.98
15	19	0.37	19	6.2	0.8	1	23	548	570	548	570	0.96
16	19	0.0038	0.19	12.4	1.9	1	23	576	598	576	598	0.99
17	19	0.0056	0.29	11.9	4.8	1	23	604	626	604	626	0.98
18	19	0.0036	0.18	12.5	4.4	1	23	632	654	632	654	0.97
19	19	2.6e-05	0.0013	19.2	1.1	2	23	661	682	660	682	0.97

Sequence Information

Coding Sequence: atGTTGGAGTTTCCTTCGGGACAAGATGTGAACATCACCGACAACGTGGTCATACGCAAGAAGGAGTTCTATGATCGTACTGACTTGCACCCACCTTCTcttattaaagaagaaatcaaaCGGGAACTTCTCGAAGAAGTAATTAATAATCCGGAAGATGATTGTAAAGAAGAAATCAAACATGAGCTCGTTGAAGACGGAATTATTAAGAATGAGGATATTGTTGAAGATGATTGTGTAAGTTTTAACACCGATATTCAACTGTATATTGAACGAAATACTTTGTTAAGTAGTCGTTACCAATGTAATTATGAAACTAACGATAGAACAAATTTAAGTCATAAACAGATCGTATCCGATCCGATTTCTACTCGCCTAGAAAATCAATCTTTTGATAATTGTAGTGGTGCAGAATCAAGACAAATAAGTAAACGTTCGTTCGAATGTCATGAGTGCGGTTATCGAACTAACAAGAAAGTAGCGTTGTTATCTCACGTCAAGATTCACTCGAAAAAGAAACCATTTAAATGTAACGCGTGCGATTTCCGCAGTAATTATTCGAGCAACTTCAAGAGACACATGAGAGTACATACTCGGCAAgtgacacaaaaatatttattcgaatGTCGCGAATGCGATTATCAAACTGACACGGAAATGGCGTTGAGGTCTCATTTAACGACGCacgaaaaaccgtttaaatgtgaCGAGTGCGATCACCGAAccaatttcaaatacaatttggAGGCGCACAAGAAAATTCACTCGAacgaaaaaccatttaaatgtaatttgtgcgATTTCCGCAGTAATTATTCGCGCAACATCGAGAGACACATGACATTACATACACAGCAagtaacagaaaaatatttattcggaTGTCGTGATTGCGATTATCAAACTGACACGAAAATAGCGTTGAGGTATCATTTAAACACACACgagaaaccgtttaaatgtgaCAAGTGCGACCACCAAACCAATTTGAAATCCAGTTTAGAGGCGCACAAAAAAGTTCACTCGAACGAAAAACCATATAAATGTAATATGTGTGATTTCCGTAGTAATTATTCGCGCAACTACAAGAGACACATGAAAATACATACTCGGCAAGtgaaggaaaaatatttattcgaatGTCACGATTGCGGTTATCAAACTGACACGAAAGTAGCGTTGAGGTCTCATTTAAAGACCCACAAGAGACCGTTCGAATGTGACAAGTGCGATCACAAAACCAATGtgaaatactttttaaagatGCACAAAAAAGTTCACTCGAacgaaaaaccatttaaatgtaatttgtgcgATTTCTGCAGTAATTATTCGCGCAACTTAAACTTACACATGATGATACATACTGGGCAATTAGTACGTAAACGTTTGTTCGAATGTCATGATTGCGGTTATCGGACTAACAGGAGAGTGTTGTTGGTATCTCACTTAATGATccacaagaaaattattaaatttgtatgcGGGGTATGTAAGATTGATGCGGGTTctgaagataatttaaaatttcatatgcTATCGCACACGGTGAagccgtttaaatgtaatttgtgcgATTACTGCAGTAAAAACTCGTGCTCGTTAAAACAACACATGATTAAACAttctggtaaaaaaaatttcagctGCGACAAGTGCGCGTACAATACTTTTACCGAAAAACTTTTAGAGACGCACAAGATAATCCactcgaaaaaaaaaccgtttaaatgtgaCTATTGCGACtataaatcgaatttaaaaCGTAGCGTTGTTAAACACCAAAGAATTCACACGAATGAAAAAgcttttaaatgtaatttgtgtgAATTCTGCAGTAATTATTCGTACAGTTTGAAGTTACACATGTTGAGACATACCGGCAATTTCAAGTTCGcctgcgacaaatgcgattacaaaGCCAGTTCCAAATGCCATTTAGAGACGCACCAGAAGGTGCACACGAAGGAAGAACCATTGAAATGCAATTTGTGCGATATCTATTATAAACGTTCGGCGGATTTAAGAAGTCACatgaaaaaacatcaaaattag
Protein Sequence: MLEFPSGQDVNITDNVVIRKKEFYDRTDLHPPSLIKEEIKRELLEEVINNPEDDCKEEIKHELVEDGIIKNEDIVEDDCVSFNTDIQLYIERNTLLSSRYQCNYETNDRTNLSHKQIVSDPISTRLENQSFDNCSGAESRQISKRSFECHECGYRTNKKVALLSHVKIHSKKKPFKCNACDFRSNYSSNFKRHMRVHTRQVTQKYLFECRECDYQTDTEMALRSHLTTHEKPFKCDECDHRTNFKYNLEAHKKIHSNEKPFKCNLCDFRSNYSRNIERHMTLHTQQVTEKYLFGCRDCDYQTDTKIALRYHLNTHEKPFKCDKCDHQTNLKSSLEAHKKVHSNEKPYKCNMCDFRSNYSRNYKRHMKIHTRQVKEKYLFECHDCGYQTDTKVALRSHLKTHKRPFECDKCDHKTNVKYFLKMHKKVHSNEKPFKCNLCDFCSNYSRNLNLHMMIHTGQLVRKRLFECHDCGYRTNRRVLLVSHLMIHKKIIKFVCGVCKIDAGSEDNLKFHMLSHTVKPFKCNLCDYCSKNSCSLKQHMIKHSGKKNFSCDKCAYNTFTEKLLETHKIIHSKKKPFKCDYCDYKSNLKRSVVKHQRIHTNEKAFKCNLCEFCSNYSYSLKLHMLRHTGNFKFACDKCDYKASSKCHLETHQKVHTKEEPLKCNLCDIYYKRSADLRSHMKKHQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -