Ater017284.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Abscondita terminalis
Gene Symbol
-
Assembly
GCA_013368085.1
Location
JABVZW010002812.1:7538-13900[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.041 2.1 9.1 0.3 2 23 88 109 87 109 0.95
2 40 0.00065 0.033 14.8 1.2 2 23 112 133 111 133 0.96
3 40 0.0046 0.24 12.1 4.7 1 23 159 181 159 181 0.97
4 40 0.18 9 7.2 6.9 1 23 187 209 187 209 0.98
5 40 1.1 54 4.7 4.4 1 23 215 237 215 237 0.98
6 40 0.0081 0.41 11.4 1.7 1 23 243 265 243 265 0.96
7 40 0.00058 0.029 15.0 1.1 1 23 271 293 271 293 0.98
8 40 0.65 33 5.4 9.9 1 23 299 321 299 321 0.98
9 40 0.29 15 6.5 5.2 1 23 327 349 327 349 0.99
10 40 0.00019 0.0095 16.5 1.7 1 23 355 377 355 377 0.99
11 40 0.021 1.1 10.1 1.9 1 23 383 405 383 405 0.97
12 40 0.023 1.2 9.9 4.7 1 19 411 429 411 432 0.96
13 40 0.0081 0.41 11.4 1.7 1 23 447 469 447 469 0.96
14 40 0.0014 0.069 13.8 1.3 1 23 475 497 475 497 0.97
15 40 0.0081 0.41 11.4 1.7 1 23 503 525 503 525 0.96
16 40 0.0014 0.069 13.8 1.3 1 23 531 553 531 553 0.97
17 40 0.95 48 4.9 9.6 1 23 559 581 559 581 0.98
18 40 1.1 54 4.7 4.4 1 23 587 609 587 609 0.98
19 40 0.0081 0.41 11.4 1.7 1 23 615 637 615 637 0.96
20 40 0.0014 0.069 13.8 1.3 1 23 643 665 643 665 0.97
21 40 0.0081 0.41 11.4 1.7 1 23 671 693 671 693 0.96
22 40 0.0021 0.11 13.2 1.0 1 22 734 755 734 755 0.97
23 40 8.9 4.5e+02 1.8 3.8 2 23 777 798 776 798 0.91
24 40 0.0085 0.43 11.3 3.4 1 23 804 826 804 826 0.98
25 40 0.0047 0.24 12.1 3.1 1 23 832 854 832 854 0.98
26 40 0.00053 0.027 15.1 0.7 1 23 860 882 860 882 0.97
27 40 0.22 11 6.8 4.9 1 23 888 910 888 910 0.97
28 40 0.009 0.46 11.2 2.8 1 23 923 945 923 945 0.98
29 40 0.014 0.69 10.7 2.6 1 23 951 973 951 973 0.97
30 40 0.35 18 6.2 4.4 1 23 979 1001 979 1001 0.98
31 40 0.005 0.26 12.0 3.0 1 23 1007 1029 1007 1029 0.98
32 40 0.09 4.6 8.1 2.9 1 23 1035 1057 1035 1057 0.98
33 40 0.0022 0.11 13.1 0.9 2 23 1204 1225 1203 1225 0.97
34 40 0.097 4.9 8.0 0.3 2 23 1232 1253 1231 1253 0.95
35 40 0.0083 0.42 11.3 4.7 1 23 1270 1292 1270 1292 0.98
36 40 0.0062 0.32 11.7 2.0 1 23 1298 1320 1298 1320 0.96
37 40 0.011 0.56 11.0 3.0 1 23 1326 1348 1326 1348 0.98
38 40 0.0045 0.23 12.2 5.5 1 23 1371 1393 1371 1393 0.98
39 40 0.024 1.2 9.9 8.8 1 23 1427 1449 1427 1449 0.99
40 40 0.22 11 6.9 5.6 1 23 1455 1477 1455 1477 0.96

Sequence Information

Coding Sequence
ATGGAGGAATCCGCAACAATTACATGcacaatttgttgtttaaaggAGGTTAAGCAAGAAGTACAATTTAATGGTTTAGCACCGGACTTAAAACACGAATTTCCTTCGGAAGAAGTTTTGAGCATCACCGAAAATCCTGTTGCGTGTAACGAATGTAAAGCGGAGATCGAAGAAACACATCGACTGTACTTGCGAAACGAATGCGTTAAAATAGAACGAGACACGATTAAGATCGAGGATTATATTCCGGTAAATATTCTGTACTGTTACGAATGTAATTACGGCACTAACGACAAACAAAATCTAATCGATCATGTTTACTCTCACCGTTTGAAATGTAACGAGTGTGGTTATACAACTTTCGATAATTCTATGTTACGGAATCACGAACGATTTCATTCTACAGAATGTAGTTCGTGTGATTTCAGCACTAAACAATTTCGTCACTTTTCAAAACAATCGGCCGAATCGAATTTTAACtgtgacaagtgcgactacaaaacgtACAATAAACACAATTTGGAGAGTCACAAAAAAGTGCATTCCAAAGAGAAACCATTTAAATGCGGCTTATGCGATTTCAGTAGTAAACACtcgcataaattaaaaatgcacttGTATAAACATTCGGGCGGACGTAGTTATAATTGCGAAAACTGCGACTTTAAAACGCACATTAAATGCAACTTGATAGCTCACCGAAAAGTTCATTCTAAAGAGAATCCGTTTAAATGCAGTTTATGCGATTACCGCGGTAAACGTTCGGGTGATTTAAAAATCCACTTCTATAGACATTCTGGTGAACGTAATTACAATTGTGACGAGTGCGGGTTCAAAACGTACACCAAATACAAGTTGGTGGCTCACCAGAAAGTTCATTCGAATCAAAGACCGTTTAAATGCCGTTTTTGTAATTACAGCAGTAAACATtcgcataaattaaaaacgcacTTGTATAAACATTCGGGCGAACGTAGTTATAAATGTGACAAGTGCGATTTTAAAACGCACGTTAAATGCAATTTGATAGGTCACCAAAAAGTGCATTCTaaagaaaaaccttttaaatgtagtttgtgCGAGTACAGCGGTAAACGTTCGGGTGATTTGAAAAAACACTTGAAAAGACATTCGGGTAAACGTTATTATGATTGTGACAAGTGCGAATTCAAAACGTACACTAAATACAAGCTTGTAGCTCACCAAAAACTTCATTCGAATCAAATATCATTTGAATGCAGTTTTTGTGACTTCAGTACTAAACGATCTAGTAGCTTGAAACGTCACTGCAAAAGCGAACCCATTTACATTCAACCATTGATTTCTGAGGATTTACCGTTTAAATGCAGTTTATGCGATTACCGCGGTAAACGTTCGGGTGATTTAAAAATCCACTTCTATAGACATTCGGGTGAACGTAATTACAATTGTGACGAGTGCGGGTTCAAAACGTACACTAAATACAAGCTTGTAGCTCACCAAAAACTTCATTCGAATCAAAGACCGTTTAAATGCAGTTTATGCGATTACCGCGGTAAACGTTCGGGTGATTTAAAAATCCACTTCTATAGACATTCGGGTGAACGTAATTACAATTGTGACGAGTGCGGGTTCAAAACGTACACTAAATACAAGCTTGTAGCTCACCAAAAACTTCATTCGAATCAAAGACCGTTTAAATGCCGTTTTTGTAATTACAGCAGTAAACATtcgcataaattaaaaatgcacttGTATAAACATTCGGGCGGACGTAGTTATAATTGCGAAAACTGCGACTTTAAAACGCACATTAAATGCAACTTGATAGCTCACCGAAAAGTTCATTCTAAAGAGAATCCGTTTAAATGCAGTTTATGCGATTACCGCGGTAAACGTTCGGGTGATTTAAAAATCCACTTCTATAGACATTCGGGTGAACGTAATTACAATTGTGACGAGTGCGGGTTCAAAACGTACACTAAATACAAGCTTGTAGCTCACCAAAAACTTCATTCGAATCAAAGACCGTTTAAATGCAGTTTATGCGATTACCGCGGTAAACGTTCGGGTGATTTAAAAATCCACTTCTATAGACATTCGGGTGAACGTAATTGCGGCAGTAGCGACAAACAAAATCTAATTGATCATCGCTTGAAATGTGACACGACAACATTACGAACGCATAGCGTAAAGAAGTACGAACTATCTCAAGAAGAATTCGAATGTCATAAGTGTTCTTACAGTACGAAcggcaaaattaatttgatacgTCATATCAAAACGTGTTTCGGCAAAGTCACATTGCAAGAAGTGATTAAGagtgaaaataaagtaaaaaacataatcaaatgCACTTTATGTGATTATCAAAATAACTGTTCgagcaatttcaaaaatcacaTGCTCAAACACTCCGGAGAGCGTCCGTTTTcctgcgacaaatgcgattataaaacgtattacaaaaattacttgaAGATCCACAAAAGGATTCATTCGACGGtgaaaccgtttaaatgtaattcgTGCGATTTCACCACGAAAAGCTCCGATTATTTGAAGGAACATACGAGTAGACATGCGGGTGAACGCAAGTTTGTCTGCGACGAATGCGACTACAACACGTATTCTAAATCTCTTTTGACGAAGCACAAAATTGTTCATTCGGTCGataaaccgtttaaatgcaACGTGTGCGATTTTAGAGCAAAGCGTTTGTGTAacttaaaatatcattttattaaacattcaaATGATAAAGCGGATCGCGCTCGAATAAATTTCTTCGAATGCagtttgtgtaattataaaaataagaattcggacaatttcaaaaatcacaTGCTTAAACATTCGGGCGAGCGTCCTTTTTCGTGCGAAAAATGCGACTACCAAACGTATACTAGAAAATATTTGACGAGTCATGAAAAAATTCATTCGgaaaaaaaaccgtttaaatgcagTTTGTGCGATTTCAGTACTAAACATTCGAACATATTAAAAACGCACTTGAGTAAACATTCGGgcgaacataattttaaatgcagCAAGTGCGAGTACAAAACATAcaccaaacaaaatttgatgagTCACGAAAAAGTTCATTCcgaagaaaaaccatttaaatgcagTTTATGCGATTTCGGCAGTAAACACtcgtttgtattaaaaatacatttgaatagACATACGGGGGAACGTAATTACGActgcgacaagtgcgattacaaaacgTATACTAAAGCCGAATCTAAACAAATTATGACCGAATTTCCAACAATTGcatgcaaaatttgttttaaacaagatGTAAAATTTAACCTAAGCGACGATTTCGTACCGAACTTAAAGTTGGAATTACCTTCCGAAGATGGTCTAAGCATCACCGAAAATCCAGTCGCGTGCAACGAATGCAAGGTGGAGATTGACGAAACTCATCAACTGCACATGCAAAACAAAAATCCGAATCCCATTAAAGAAGAATATTTAATCAAGACGGAACGATTTGAGGAAGAGGTATTCAATAGCGACACACCTTTGAATATTCCAATTCTGTATTGTTACGAATGTAATTACGGCACCAAGGACAAAGAAATTCTAATCGATCATGTTTTCGCTCACCGCTTGAAGTGCACCCGATGCAGTTATTCCACTATCGATAATTCTATGTTAAGGACTCACCTACAAGTTCATTTAATCACTGAATCTTTACGATGCACAATATGCAATTACGCTTGCGTCGAAATCAACTTATTAAACGAACATATGTCCGCGCATACTGCTGCAGAACTTcctaaaaacgaaaaaaaatatgaagagaaACCGTTTAAGTGTAATTCTTGTAATTTCACTACAAAAAACTcgtattatttaaaagaacacACGCAAAAACATTCGGTCGAATGCAAGTTTGActgcgacaagtgcgattaCAAATCGTATTCGAAATATCTTTTGAGGAAACACAAAATTGTTCATTCCGTTGATAAACCGTATAAATGCAATTTGTGTGATTTCAAGGCGAAACGCTTGCAGAACTTAAAATCACATTTTATGAAACATTCGGTTGATTTGTCGAACGAAACCATATCGATGGATCATGTGGATGCGCACACGGGAATGAAAGTTttcaaatgcaatttatgtaattatcaaTGTAAGAGtttagacaattttaaaaatcacttgCTTAAACATTCCGAAAAGATTCATTTTTGCTGCGACAAATGCAACTACAAAACGTATATGAAATATCATTTGACGTGTCATCAAAAAGTTCATTCcgaagaaaaaccgtttaaatgttgTTCATGCGATTTCACTACAAAACATTCGAAATCGTTAAAAGAACATATGCGAAAGCACTCGGTCGAAAGCAAGTttagctgcgacaaatgcgaccACAAGACGTattctaaatatctttttaggaaacataaaattcttcattCGGTTGGTAAAACCACTTAA
Protein Sequence
MEESATITCTICCLKEVKQEVQFNGLAPDLKHEFPSEEVLSITENPVACNECKAEIEETHRLYLRNECVKIERDTIKIEDYIPVNILYCYECNYGTNDKQNLIDHVYSHRLKCNECGYTTFDNSMLRNHERFHSTECSSCDFSTKQFRHFSKQSAESNFNCDKCDYKTYNKHNLESHKKVHSKEKPFKCGLCDFSSKHSHKLKMHLYKHSGGRSYNCENCDFKTHIKCNLIAHRKVHSKENPFKCSLCDYRGKRSGDLKIHFYRHSGERNYNCDECGFKTYTKYKLVAHQKVHSNQRPFKCRFCNYSSKHSHKLKTHLYKHSGERSYKCDKCDFKTHVKCNLIGHQKVHSKEKPFKCSLCEYSGKRSGDLKKHLKRHSGKRYYDCDKCEFKTYTKYKLVAHQKLHSNQISFECSFCDFSTKRSSSLKRHCKSEPIYIQPLISEDLPFKCSLCDYRGKRSGDLKIHFYRHSGERNYNCDECGFKTYTKYKLVAHQKLHSNQRPFKCSLCDYRGKRSGDLKIHFYRHSGERNYNCDECGFKTYTKYKLVAHQKLHSNQRPFKCRFCNYSSKHSHKLKMHLYKHSGGRSYNCENCDFKTHIKCNLIAHRKVHSKENPFKCSLCDYRGKRSGDLKIHFYRHSGERNYNCDECGFKTYTKYKLVAHQKLHSNQRPFKCSLCDYRGKRSGDLKIHFYRHSGERNCGSSDKQNLIDHRLKCDTTTLRTHSVKKYELSQEEFECHKCSYSTNGKINLIRHIKTCFGKVTLQEVIKSENKVKNIIKCTLCDYQNNCSSNFKNHMLKHSGERPFSCDKCDYKTYYKNYLKIHKRIHSTVKPFKCNSCDFTTKSSDYLKEHTSRHAGERKFVCDECDYNTYSKSLLTKHKIVHSVDKPFKCNVCDFRAKRLCNLKYHFIKHSNDKADRARINFFECSLCNYKNKNSDNFKNHMLKHSGERPFSCEKCDYQTYTRKYLTSHEKIHSEKKPFKCSLCDFSTKHSNILKTHLSKHSGEHNFKCSKCEYKTYTKQNLMSHEKVHSEEKPFKCSLCDFGSKHSFVLKIHLNRHTGERNYDCDKCDYKTYTKAESKQIMTEFPTIACKICFKQDVKFNLSDDFVPNLKLELPSEDGLSITENPVACNECKVEIDETHQLHMQNKNPNPIKEEYLIKTERFEEEVFNSDTPLNIPILYCYECNYGTKDKEILIDHVFAHRLKCTRCSYSTIDNSMLRTHLQVHLITESLRCTICNYACVEINLLNEHMSAHTAAELPKNEKKYEEKPFKCNSCNFTTKNSYYLKEHTQKHSVECKFDCDKCDYKSYSKYLLRKHKIVHSVDKPYKCNLCDFKAKRLQNLKSHFMKHSVDLSNETISMDHVDAHTGMKVFKCNLCNYQCKSLDNFKNHLLKHSEKIHFCCDKCNYKTYMKYHLTCHQKVHSEEKPFKCCSCDFTTKHSKSLKEHMRKHSVESKFSCDKCDHKTYSKYLFRKHKILHSVGKTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-