Ater016410.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- R08D7.1_1
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002734.1:46683-51724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0015 0.076 13.7 0.2 1 23 800 822 800 822 0.95 2 12 4.4e-05 0.0022 18.5 1.6 1 23 830 852 830 852 0.99 3 12 0.0001 0.0053 17.3 0.3 2 23 860 881 859 881 0.97 4 12 4.6e-05 0.0023 18.4 0.8 1 23 887 909 887 909 0.98 5 12 0.00032 0.016 15.8 4.7 1 23 916 938 916 938 0.99 6 12 0.01 0.53 11.0 2.7 1 23 944 966 944 966 0.96 7 12 5.8e-05 0.003 18.1 0.1 1 23 972 994 972 994 0.98 8 12 4.1e-07 2.1e-05 24.9 1.1 1 23 1000 1023 1000 1023 0.96 9 12 2.5e-05 0.0013 19.3 0.6 1 23 1029 1052 1029 1052 0.96 10 12 2.3e-05 0.0012 19.4 2.2 1 23 1058 1080 1058 1080 0.99 11 12 0.0003 0.015 15.9 0.4 1 23 1086 1108 1086 1108 0.94 12 12 0.008 0.41 11.4 0.1 1 21 1114 1134 1114 1138 0.92
Sequence Information
- Coding Sequence
- ATGGAAGTTGTTAACCAGaaagaatacttaaaaaaatacttatcgggaggcaaaaaagataaaaagaagaagaagcgTAAAAGAAACGAGGCATCGGACAGAGTAAAGATCATCGACGACGACATCGGTTTAACCAAAGAGTCACTGAACGACGCAGAGGACTTATTTACCACCAACGAAGACGCGCCACAGATCGTAGGCGTAGTCGATGAACGCCCCATGCACATGCGAATAGATGATTACCGTCAAAGCGATTTATGGAGACCGTTGGGAGCTGCAACTAACGACACTGCCGAAAACGCATTCAAAGGTAGCATGTTTCAAAAGGAGAaagaatttttacttaaattaataaagaaagaatcgaataaagattttaaaagcatttcGTTAAATAAGACGCAAAAATCGAAAAGGCATAAAGATCAAGTGAATAGATGGAACTTGGGTAGTAATTTGACACAAAGAAAAGAGAGCGTCGAACAAGAGGATGGCGGCGTCAAggatgaagataaaaatttttttgtacctgATGATTGTAGTTCGGTGGTGACGGGTCACAACAGCGATAACGAATTGGATAGTAGTCCACCTCGGCGTTCGAAAAGAAGTGATGCACCTTCTGACAGCAGTCCACCTCGGCGTTCAAAAAAAAGCGATGCACCTTCGGATAGCAGTCCACCTCGGCGTTCGAAGAGAAGTGCGGACAAAAGCCCACCTCGCAAATACAAAAGATATAGTCCTCCAAGGAGAGCAGATAGTAGTCCTAAGCGGAAGCTTCTTCCTGGAAATGATAAAGGCAAATATTTAATACCAGCCAAAAGAAAAACGAAGACGCTCGATGGTAAGACAGCAGGGTTGCAAAATGCGACCGAGCTTGTGGCCGAGAACGAAGCTTTTCGAAAACGCGAAGACGATTTATTCAAAAGCATGTCTGCTGAATATACCGGAGTGAATGCCCAAACGGTGTTGAGAGATAGGAGAACAGGTAAAATCCGAGATTTGAAGAAGGAAGAGGAagataaattggaaaaacaaagaCAAGAGGAGATTAATAAAGAGAAGTATTCAAGATGGGGGAAAGGGTTGAAACAAGTCGAAGATTATGAGAATAAATTGCAGCAGGATGTGGTCGAAATGAATAAACCGTTAGCTCGTTATGCGAACGATGAGGATTTAGAAAGGTATCTTAAAGAACAGGAGCGCGAAGGGGATCCGATGTTGGATTAtattagaaagaagaaaaggagTAAGGATGTCGAGACTGGGAGACCGATTAAGCCGCAGTTTGAGGGTGAATTTATGCCGAATAGATTTGGAATACGTCCCGGTCATAGGTGGGACGGGGTCGATCGTTCTAACGGTTACGAGAAGAAGTGGATCGATGTACAGAATGCTAAGCAAGCGATTCAAGAGGAGGTGTATAAGTGGAGCACAGAAGATATtaTGTCCACTGCATCAGCTGCCGCAAAAGAAAATCCACACTGTTTAATATGCAACGCCCGAGTCGGCGTATCGACACGCACCTCGTTACAAATCTTTTCGAAAGAGGTAATACATCACCGATCTAACCATCAcgttacaattaattttcagaatcaAACTTGCACGGAAAAGCCAATCAGCCTAGTTATAGCTCAAGTTCTCGAAGAAAAAATCACAGAAGACTCCGTACATTCTTTATTGATATGCAAAAAGTGCTTTAAATTATTCGACGAGTTAGAAGAATTGGAACAAAGAATTGATGAAATCAAAGATGAAGTCGTCGCTAACTATAGGCGTTCCATTAATATCATCAAAAACGGTGATGAAAACGATGATGAACAACAACAGAAAGATAATATAGTTCCGAAAACACTCCTCGATATACCTTCATCAGACGAAGACACTCAAGCCAGTGCCGATAAACCTACTTTCAATACAATGGCAGACATCGAAATGCAACTGGTGAAAATTCACGGTGGTAAACCCGAAAATGACGAAACTAATAGATTACAAGACACACCTTTTCAAACTTACGATACTGATATTATGGACGCGGGCGCTCTCGATCATTCGTCAGATTCAGATTATGAACCACCTGGAGGCGATAACACCGAAGCTTTATTACAAGCGGCGGCGATTGCAGAAAAAAACCTCGCAGAAGTTCAAATTAAATCGGAACCCGGAGTCGAGATTAGTTTACCTGAAAAACCCAACAtattaaaacgaaaagaaatttataacgatccaaagaaaattttgctaaacaaaaaattcaaagaagaaaCAATATCACCCGTTGTAGCCCGTGACGGTTCTTTATACACCTGCTTGTTGTGTGAGGGGGAGGAAACTGTGTGCGGGGAAGCAAAAGCTATAATCCTACATGTACGACAAGTTCATGATAACCGTTTGTATATTTGTGATGTGTGCGGGCAAGATTTTAGAAAACGCAATGAGCTTTCCATGCATTTAGATGAACATGTAGCAACCGAAGAGGGAGACTTTCAATGCGAGATTTGTAACAGAATATTCAGTAATTTACGATTATTTAGAATACACAAACGCATGCACTATCCACAAAATAAAGCGTGGAAGTGCGATATGTGTGGCAAAAAATATAGTTCGCGAAATCTTCTGGACGAACACATTAACGTTCACACAGGTTTGCGACCGTATATTTGTGCGACGTGCGGCAAAGATTTTGCTTCGAAATATACATTCAAAGCCCACGAGAAGACGCACGAAGTTAGGCCGCGTCCATTCCAATGCCAGCActgtaataaatcatttttgagtCAACAGAATTTGTCGCAACATGAAAGGACTCATTTAGGAATAAAGGAGTTTTGTTGTCAGTTATGTTCAAAGCAATTTGGATCGGCACATAATCTTGAGGTACATTCGCTCGTCCACACTGGGTATAAACCGTTTATTTGCGGCCTTTGTGGGAAGGCATTCGCTCGAAAGGCCGAAATTCGCGATCACGAACGAACTCATACAGGAGAGAGACCGTATCAATGTGAATATTGTGGCGCGACCTTTAGTCAACGATCTAATCTGCAATCTCACAAACGTGCCACACATTACGATGACAAACGGTATAAATGTGATATGTGTGGAAAGGGATTTAAACGAAGAAGGTTGTTGGATTATCACATAAAAGCTGCTCATACCGGTGAGAGGCCGTATAAGTGTCAAGTATGTGAAGCCACTTTCGTTTACCCTGAACACTTTAAAAAGCATCAACGCATTCACACAGGCGAAAAACCTTTTCTTTGTGAAGTGTGTGGAAAAGCATTCAACAGTCGCGATAATAGAAATGCGCATAGATTTGTGCATTCTGATAAAAAGCCGTATGAATGTCTGGTGTGTGGGGCCGGTTTTATGCGGAAACCGCTGTTATATCAGCATATGCAAGCGCAAGGTCATCTTAATGATACAATCGTAGTTAATCAACCTCGTTTAACTACGGACGATGATCAAATAATTACGGTAAACGCCGATGGCGAAAtggaaattgttgaaaatgaagGAGTAGCTAACTTAGAAACAATCGAAGTAGCAGATGAAGATGCTACGGAAGATTCCAAATTGTATATTGCTGAACATATGTTAGTTGAAGGGGGTGAAATGTTTGAAGATACAAAGACTTTTGTAAACTTAGATGAAGATCAAATGGCAGAAACTGAAGGAATCGAGCATATTATAATAGACGGGCAGCAAATACAGTTTGCCGAAGAAGGCGAAGGTGAAGAAATCGAAGAAACTGAAGAACAAGTGGAAGAAGGTCAACAGGTTGTTTCCGGCACGGACGACATAGAAGAGATGATCGTCAACGGTAACATCCTCAATGGAAAAACCCAAGTCATAGAAACACCGGATGGACCAATACATTATGTGCATGTGCGAATTCCTAATGATAATGGTGAAGATGAGGAAGCCTGGTTGAAAAtagttagaaaataa
- Protein Sequence
- MEVVNQKEYLKKYLSGGKKDKKKKKRKRNEASDRVKIIDDDIGLTKESLNDAEDLFTTNEDAPQIVGVVDERPMHMRIDDYRQSDLWRPLGAATNDTAENAFKGSMFQKEKEFLLKLIKKESNKDFKSISLNKTQKSKRHKDQVNRWNLGSNLTQRKESVEQEDGGVKDEDKNFFVPDDCSSVVTGHNSDNELDSSPPRRSKRSDAPSDSSPPRRSKKSDAPSDSSPPRRSKRSADKSPPRKYKRYSPPRRADSSPKRKLLPGNDKGKYLIPAKRKTKTLDGKTAGLQNATELVAENEAFRKREDDLFKSMSAEYTGVNAQTVLRDRRTGKIRDLKKEEEDKLEKQRQEEINKEKYSRWGKGLKQVEDYENKLQQDVVEMNKPLARYANDEDLERYLKEQEREGDPMLDYIRKKKRSKDVETGRPIKPQFEGEFMPNRFGIRPGHRWDGVDRSNGYEKKWIDVQNAKQAIQEEVYKWSTEDIMSTASAAAKENPHCLICNARVGVSTRTSLQIFSKEVIHHRSNHHVTINFQNQTCTEKPISLVIAQVLEEKITEDSVHSLLICKKCFKLFDELEELEQRIDEIKDEVVANYRRSINIIKNGDENDDEQQQKDNIVPKTLLDIPSSDEDTQASADKPTFNTMADIEMQLVKIHGGKPENDETNRLQDTPFQTYDTDIMDAGALDHSSDSDYEPPGGDNTEALLQAAAIAEKNLAEVQIKSEPGVEISLPEKPNILKRKEIYNDPKKILLNKKFKEETISPVVARDGSLYTCLLCEGEETVCGEAKAIILHVRQVHDNRLYICDVCGQDFRKRNELSMHLDEHVATEEGDFQCEICNRIFSNLRLFRIHKRMHYPQNKAWKCDMCGKKYSSRNLLDEHINVHTGLRPYICATCGKDFASKYTFKAHEKTHEVRPRPFQCQHCNKSFLSQQNLSQHERTHLGIKEFCCQLCSKQFGSAHNLEVHSLVHTGYKPFICGLCGKAFARKAEIRDHERTHTGERPYQCEYCGATFSQRSNLQSHKRATHYDDKRYKCDMCGKGFKRRRLLDYHIKAAHTGERPYKCQVCEATFVYPEHFKKHQRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQAQGHLNDTIVVNQPRLTTDDDQIITVNADGEMEIVENEGVANLETIEVADEDATEDSKLYIAEHMLVEGGEMFEDTKTFVNLDEDQMAETEGIEHIIIDGQQIQFAEEGEGEEIEETEEQVEEGQQVVSGTDDIEEMIVNGNILNGKTQVIETPDGPIHYVHVRIPNDNGEDEEAWLKIVRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -