Ater013973.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002579.1:79210-81393[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.4e-05 0.0033 18.0 3.0 1 23 249 271 249 271 0.95 2 12 0.095 4.8 8.0 0.2 2 23 274 296 274 296 0.92 3 12 6.1e-07 3.1e-05 24.4 1.7 2 23 366 387 365 387 0.97 4 12 0.00063 0.032 14.9 0.2 1 23 393 415 393 415 0.97 5 12 0.00035 0.018 15.7 1.4 2 23 422 443 421 443 0.97 6 12 1.4e-05 0.00073 20.0 1.7 1 23 449 471 449 471 0.98 7 12 0.00035 0.018 15.7 0.8 1 23 477 499 477 499 0.98 8 12 2.2e-07 1.1e-05 25.7 1.7 1 23 507 529 507 529 0.98 9 12 0.0009 0.046 14.4 0.2 1 23 535 557 535 557 0.97 10 12 1.9e-05 0.00098 19.6 1.3 1 23 563 585 563 585 0.98 11 12 0.00035 0.018 15.7 0.6 1 23 591 613 591 613 0.98 12 12 8.4e-05 0.0043 17.6 0.7 1 23 619 641 619 641 0.98
Sequence Information
- Coding Sequence
- ATGGCCACCGAAGATAACACGAGATATAGCGACCTATGTAGACTTTGTGCGACCAAAACAAATACGATTTTGgccataaatatttttgaaaatgaggGCGCGATGCGCGAACTTAATAAGAAAATCGAAACGTGTCTTCCTATTcaaGTGCACGAGTCCGATCAACTACCGAAAATGATATGCGAAAGCTGTCTGTATAAGTTGGAGTTGTTCTTCGATTTTCGAGAACGGTCGGTGCGTACCGAAAACATTCTAGTAACATTATTGAAAGAAATCAAAGCGACCGAGATTCCTATAGAAACCGCAACCAGTATGATTATGATACAAGAACCGCTCGTACAACAAGaagtacaaaatgaaattgactTGTCGCATCTGCAGCAACGTGATTTAATTGTCGAACAAGAGATAATCTTGTCTCAGACGAATGTCGATTTAGGTAACATACATTTAAATCATGAAGAGGGTATTTTGGTGGATGATAAAACGTATCCAGATGAGAGTTTACTAATACAACAAGACCCGTTATTAACGGAAGAGTATCCGTTGCACATAGATGAAACAACCGTTGTTAGTGACATGATTGTTGAGAACTCGTCCTCAGACATTCAAGACTCTATTATATGTAAGGAAGAGTACAACATAATCAAGACTGAGTCGTTCAAAGATAATTTTTCACCCGTTTACATCACCGAAAATGTTAACATTAATCCGTCTACTATAAAGTCGAGGGACGATGAGTGGTTCCACTGTAATATGTGCGGGCGTAGTTTTAAGGACAAAGTTGAATTTCAAACCCACTATGAAGACCACTTTAATAAGTGTGCGGCTTGTTTGGCCGTTTTTACTAATCGTGAAGCTTTAAACGAACATCGTAAGGAAATGCATGGCTCGACTTTGGAGGAAACTAAGcCAATCAAAACCAGGTTGAAAAGGGCGACGGtgcctttaaaaaaacaaaatggtgtTAAGGCGGCTAGCTATAGTGATAGTGACGATGGTGTTCAGGAGCCGTTCGAGGAGGAAGAAGATGAGGACGATCAGGAAGAAGTTACGGAATCACCGATCAGTCGCCGGAAAAAATGGTCTTTGAAAGAATGCAAGGAATGTGGTAAAACTTATAAGACGAATTATAAGTTGGCTGAACACATGCGAAAACATACCGGAGAAAAACCATACAAATGCGGATCATGTGAAAAAGCGTTTCGATCTAAAATTGGGTTGGCACAGCACGAGGCGAAACACACAGGTCAGTACGATTTATCGTGTCCGACTTGCGGCAAAGGATTTCAATGTAAAAGCTACTTAATGGTGCACCAACGAGTACACTCGGACGTGAAACCATATCCGTGTACTACTTGtggtagaaattttaaaacaaaacaatcgtTACTTGACCATACAAATCGCCATTTAGGTGTTAAGCCATACATGTGCGATGTCTGTGGACGAGGTTTCATCACAAAAgGTTTGTGCAAAGCACATCAGAAGGTACACACTGGTTTAGATAATCGGAAGTATTCTTGCAAGGTctgtaataaaatgtttgtatcgAAAAGCTACCTTCAAACACATTTGCGCATCCACACTGGAGAGAAACCTTTTATTTGCGAGGTGTGTGGAAAGGGATTTTTAACTCGGGTCGATTTGAAGATACATACTACTATGCACACTGGCGAGAAATCTTATGTGTGCGAAATGTGTGGAAAAGCTTTTGCTAGGAGGGACGCGCTTAGGTGTCATCGAAGATCTCATACCGGAGAAAGGCCGTATAGCTGTGATCAGTGCGGGCAAACGTTCACTCAGTTTTCACCTATGGCTATACATAAGCGATTGCATACAGGAGAACGGCCGTATTCCTGCGAAGTCTGCGGACAAACTTTTGTTTCTAGATCAACGATGGTGTCACACTCGAAAAGACACGTTAGGTAG
- Protein Sequence
- MATEDNTRYSDLCRLCATKTNTILAINIFENEGAMRELNKKIETCLPIQVHESDQLPKMICESCLYKLELFFDFRERSVRTENILVTLLKEIKATEIPIETATSMIMIQEPLVQQEVQNEIDLSHLQQRDLIVEQEIILSQTNVDLGNIHLNHEEGILVDDKTYPDESLLIQQDPLLTEEYPLHIDETTVVSDMIVENSSSDIQDSIICKEEYNIIKTESFKDNFSPVYITENVNINPSTIKSRDDEWFHCNMCGRSFKDKVEFQTHYEDHFNKCAACLAVFTNREALNEHRKEMHGSTLEETKPIKTRLKRATVPLKKQNGVKAASYSDSDDGVQEPFEEEEDEDDQEEVTESPISRRKKWSLKECKECGKTYKTNYKLAEHMRKHTGEKPYKCGSCEKAFRSKIGLAQHEAKHTGQYDLSCPTCGKGFQCKSYLMVHQRVHSDVKPYPCTTCGRNFKTKQSLLDHTNRHLGVKPYMCDVCGRGFITKGLCKAHQKVHTGLDNRKYSCKVCNKMFVSKSYLQTHLRIHTGEKPFICEVCGKGFLTRVDLKIHTTMHTGEKSYVCEMCGKAFARRDALRCHRRSHTGERPYSCDQCGQTFTQFSPMAIHKRLHTGERPYSCEVCGQTFVSRSTMVSHSKRHVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00153786;
- 90% Identity
- -
- 80% Identity
- -