Ater017431.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Abscondita terminalis
Gene Symbol
-
Assembly
GCA_013368085.1
Location
JABVZW010002826.1:104270-106761[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.09 4.6 8.1 0.4 1 23 105 127 105 127 0.95
2 25 0.0091 0.46 11.2 2.5 1 21 129 149 129 150 0.95
3 25 7.9e-06 0.0004 20.9 5.3 1 23 157 179 157 179 0.98
4 25 0.011 0.58 10.9 2.1 3 23 187 207 185 207 0.97
5 25 0.0009 0.046 14.4 7.8 1 23 213 235 213 235 0.98
6 25 0.011 0.58 10.9 2.1 3 23 243 263 241 263 0.97
7 25 0.00046 0.023 15.3 6.0 1 23 269 291 269 291 0.98
8 25 0.012 0.62 10.8 1.7 3 23 299 319 297 319 0.97
9 25 0.0014 0.07 13.8 5.0 1 23 325 347 325 347 0.98
10 25 0.011 0.58 10.9 2.1 3 23 355 375 353 375 0.97
11 25 0.0015 0.078 13.7 9.0 1 23 381 403 381 403 0.98
12 25 0.011 0.58 10.9 2.1 3 23 411 431 409 431 0.97
13 25 0.0009 0.046 14.4 7.8 1 23 437 459 437 459 0.98
14 25 0.011 0.58 10.9 2.1 3 23 467 487 465 487 0.97
15 25 0.0009 0.046 14.4 7.8 1 23 493 515 493 515 0.98
16 25 0.0077 0.39 11.4 4.4 1 23 521 543 521 543 0.98
17 25 0.00027 0.014 16.0 6.1 1 23 549 571 549 571 0.98
18 25 0.0019 0.099 13.3 2.1 1 23 577 599 577 599 0.98
19 25 0.00048 0.025 15.2 5.7 1 23 605 627 605 627 0.98
20 25 0.0013 0.066 13.9 4.0 2 23 634 655 633 655 0.96
21 25 0.00015 0.0076 16.8 6.4 1 23 661 683 661 683 0.99
22 25 0.11 5.5 7.8 5.8 1 23 689 711 689 711 0.98
23 25 0.0015 0.078 13.7 6.4 2 23 718 739 717 739 0.96
24 25 0.0048 0.24 12.1 5.3 1 23 745 767 745 767 0.97
25 25 0.0037 0.19 12.4 11.5 1 23 773 795 773 795 0.98

Sequence Information

Coding Sequence
ATGACCGAAACTACAGTATTTTACCGAATTGATTTAAAAGAAGTAAGGGAAGGAACCCTAAACAACCCTATAAAAACAGATTTGACCACTGATGAAAATCGTCTTCCGTGCAACGATTTCAAGATCAAAACCGAAGAAGAATATCGAGCCTTCATGCACAATAAAACCGATTCATTTGCGACAAACTTCTCATCACGCGTTAGTAAAGAAAACGGCTTAGAAACAATCAAACATGAGTTTATCGAGGTCgcagttaaaaatgaaattactctAAAAGAAGAATATGTTTGCGTTGAAGAATCTGTTATTTCGTATTACTGCGAGCGATGCGATTATGCTACAAgcgataaacaaatattaaccaATCACATATTCGCCCACCTATTTAGGTGTAATCTGTGCGGTTACAAATGTTATGCGAAAAGTGATTTATCTCGTCACAAGAAAATACGCACTcgagaaaaactgtttaaatgcAATATATGTGATTATTGCAGCACTAGATCCAGCAACCTGAAAACGCACATGTACAGACATTCTGGGGAGAAAGCTTTCGGATGTGACGAGTGCGATTACAAATGTTATGCGAAAAGTGATTTATCTCGTCACAAGAAAATACACactcaagaaaaaccgtttaaatgtaatttttgcgaTTATGGTTGCAGTCGATCAAGCCATTTGAAAACGCACTTGTATAAGCATTCTGGGGAGAAAGCTTTCGGATGTGACGAGTGCGATTACAAATGTTATGCGAAAAGTGATTTATCTCGTCACAAGAAAATACACActcaaaaaaaaccttttaaatgtaatttttgcgaTTATTGCAGCAGTTCATACGACAACCTGAAAACGCACATGTACAGACATTCTGGGGAGAAAGCTTTCGGATGTGACGAGTGCGACTACAAATGTTATGCGAAAAGTGATTTATCTCGTCACAACAGAATACATactcaagaaaaaccgtttaaatgtaatttttgcgaTTATTGCAGCAGCATATCGAGCAATCTGAAAATGCACATGTACCGACATTCTGGGGAGAAAGCTTTCGGATGTGACGAGTGCGATTACAAATGTTATGCGAAAAGTGATTTATCTCGTCACAAGAAAATACACActcaaaaaaaaccttttaaatgtaatttttgtgattattgctgCAGTGAATCCCGCAATCTAAAAAAGCACATGTACAGACATTCCGGAGAGAAAGCTTTCGGATGTGACGAGTGCGATTACAAATGTTATGCGAAAAGTGATTTATCTCGTCACAAGAAAATACACActcaaaaaaaaccttttaaatgtaatttttgcgaTTATGGTTGCAGTCGATCAAGCCATTTGAAAACGCACTTGTATAAGCATTCTGGGGAGAAAGCTTTCGGATGTGACGAGTGCGATTACAAATGTTATGCGAAAAGTGATTTATCTCGTCACAAGAAAATACACActcaaaaaaaaccttttaaatgtaatttttgcgaTTATGGTTGCAGTCGATCAAGCCATTTGAAAACGCACTTGTATAAGCATTCTGGGGAGAAACCATTCAGctgtgataagtgcgactacagatgttacatcaaaagtgaTTTATCTCGTCACAAGAAAATACACACtcaagaaaaactgtttaaatgcAATCTATGTGATTATTGCAGCACTAGATCCAGCAACCTGAAAACGCACACGTACAGACATTCTGGGGAGAAACTTTTCAGCTGTGGTGAGTGCGGCTACAgatgttacatcaaaagtgaTTTATCCCGCCACAACAGAATACATactcaagaaaaaccgtttaaatgtaatttttgcgaTTATTGCAGCAGCATATCGAGCAATCTAAAAAAGCACATGTACAGACATTCCGGGGAGAAACCATTGAGctgtgataagtgcgactacagGTGTTACAGCAAAAGTAATTTGTCTCGGCACAATAAAATACATACTAatgaaaaacagtttaaatgtaatttttgtgattattgcagcagTTCATACGACAACCTGAAAACGCACAGGCGAACGCATTCCGGAGAGAAACCTTTCAGTTGTGATAAATGTGATTACAAATGTCGCTATAGGAGTCGATTATCTTACCACAATCGAATACACACTCAAGAAAAGCcattgaaatgtaatttttgcgaTTATGGTTGCAGTCGATCAAGCCATTTGAAAACGCACTTGTATAAGCATTCTGGGGAGAAACCATTCAGctgtgataagtgcgactatAGGTGCTACAAGAAAAGTGATTTATCTCGCCACAATCAAATGCACGGTCAAgtaaaaccgtttaaatgtaatttttgtgattattgctgTAGCCAATCGACCCACTTGAAAACGCACATGTACAAACATACTGGGGAAAAACCTTTCAGATGTGTGAAGTGCGACTACAGTTGTTGCAGCGAAAAGTGA
Protein Sequence
MTETTVFYRIDLKEVREGTLNNPIKTDLTTDENRLPCNDFKIKTEEEYRAFMHNKTDSFATNFSSRVSKENGLETIKHEFIEVAVKNEITLKEEYVCVEESVISYYCERCDYATSDKQILTNHIFAHLFRCNLCGYKCYAKSDLSRHKKIRTREKLFKCNICDYCSTRSSNLKTHMYRHSGEKAFGCDECDYKCYAKSDLSRHKKIHTQEKPFKCNFCDYGCSRSSHLKTHLYKHSGEKAFGCDECDYKCYAKSDLSRHKKIHTQKKPFKCNFCDYCSSSYDNLKTHMYRHSGEKAFGCDECDYKCYAKSDLSRHNRIHTQEKPFKCNFCDYCSSISSNLKMHMYRHSGEKAFGCDECDYKCYAKSDLSRHKKIHTQKKPFKCNFCDYCCSESRNLKKHMYRHSGEKAFGCDECDYKCYAKSDLSRHKKIHTQKKPFKCNFCDYGCSRSSHLKTHLYKHSGEKAFGCDECDYKCYAKSDLSRHKKIHTQKKPFKCNFCDYGCSRSSHLKTHLYKHSGEKPFSCDKCDYRCYIKSDLSRHKKIHTQEKLFKCNLCDYCSTRSSNLKTHTYRHSGEKLFSCGECGYRCYIKSDLSRHNRIHTQEKPFKCNFCDYCSSISSNLKKHMYRHSGEKPLSCDKCDYRCYSKSNLSRHNKIHTNEKQFKCNFCDYCSSSYDNLKTHRRTHSGEKPFSCDKCDYKCRYRSRLSYHNRIHTQEKPLKCNFCDYGCSRSSHLKTHLYKHSGEKPFSCDKCDYRCYKKSDLSRHNQMHGQVKPFKCNFCDYCCSQSTHLKTHMYKHTGEKPFRCVKCDYSCCSEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-