Ater013442.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002556.1:66384-71371[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.027 1.4 9.7 3.0 1 23 118 140 118 140 0.97 2 23 0.0022 0.11 13.1 1.4 1 23 142 164 142 164 0.97 3 23 3.3e-05 0.0017 18.9 2.1 2 23 183 204 182 204 0.96 4 23 0.0038 0.2 12.4 7.7 1 23 210 232 210 232 0.97 5 23 0.0043 0.22 12.2 6.7 1 23 238 261 238 261 0.93 6 23 0.011 0.54 11.0 0.5 2 23 292 313 291 313 0.96 7 23 3.1e-05 0.0016 19.0 7.1 1 23 319 341 319 341 0.98 8 23 0.00085 0.043 14.5 1.1 1 23 347 369 347 369 0.98 9 23 0.00021 0.011 16.4 3.1 1 23 375 397 375 397 0.98 10 23 0.00018 0.0092 16.6 8.0 1 23 403 425 403 425 0.98 11 23 0.00097 0.049 14.3 7.6 1 23 431 453 431 453 0.97 12 23 0.00058 0.029 15.0 7.3 1 23 459 481 459 481 0.98 13 23 0.00049 0.025 15.2 4.3 1 23 487 509 487 509 0.98 14 23 0.022 1.1 10.0 2.2 1 23 515 537 515 537 0.98 15 23 0.0037 0.19 12.4 4.1 1 23 543 565 543 565 0.93 16 23 2.9e-05 0.0015 19.1 3.3 1 23 571 593 571 593 0.99 17 23 0.00015 0.0077 16.8 5.8 1 23 599 621 599 621 0.98 18 23 0.00029 0.015 15.9 5.0 1 23 627 649 627 649 0.97 19 23 0.0016 0.079 13.6 0.9 1 23 685 707 685 707 0.97 20 23 0.00016 0.008 16.8 0.3 1 23 709 731 709 731 0.97 21 23 0.065 3.3 8.5 2.4 2 23 738 759 737 759 0.96 22 23 0.0016 0.082 13.6 1.1 1 23 779 801 779 801 0.98 23 23 2.3 1.2e+02 3.6 1.1 1 20 807 826 807 828 0.93
Sequence Information
- Coding Sequence
- ATGGCAGAAACCAGAAGATGCCAAGTTTGTTTAGAAGAAACCGTACTTCATCCCCTAAACAACATTTCAACGCGACACCCCGAATTGTCGAATTTACCAGCAgATGAAATTCCACTTTGCAATAAATGCAAGTCCGTATTTGTCAAGGAAGGTGGAATCGACACGAAAAAACACGTTTCAAACTTATCATTGATAAATAACTTCGCACTTGTTAACgaagaaaattatatagaaacaaTCAAAGAAGAGCTTGTTGATGTtgcaattaaaactgaaattgaagGCGTTGTCAAAGaagaaaatgtgttatttaataCGGACATGGAATGGTTTTCATCATCCGTTATCTTGTACTACTGCTACCATTGCAGTTACGCCACTAACGATAAACAAATGTTAACCGATCACATATTTTCTCACTTCTTTAAATGCAACCTATGCAGTTATGCTACGTTTGATAATTCCtcattaaacaaacataaagaCGTTCACATTAATATTGCATCGGATGAACAGCTCTCTCGTCACAATAACGAAAAACGgcttaaatgtaatatttgtgGTTATAGCAGCAATCATGCCAGCAACCTCAGGCGACATGTGTTCAAACATTCTGGAGAGAAACCTTTCAGCTGTGACAAGTGTAACTACAGGTGCCgccaaaaacacaatttaattcgGCACAGTCTGAAGCACACCCGAGAAAAACCGTTTATGTGTAATTATTGTGATCATAGGACCACTCGAAAAGAACATTTAACAAAGCACAACATGAACAAACATTCAGGAGAAAAATCGCTCGTTTGTGATAAGTCCAACTCCaggtattttttgattcaccACAATGTAACACGCACTCAAGAACAATTGTTgaagtgtaatttttgtgattataacAGCGTTTATGAAGACGATTTGGTAAAGCACATGTACCAACATTCGGAAGAGAAGCGTTTCAGATGTGATAAGTGTAACTACACGTgttgcaaaaaaagtaatttaattcgGCACATTAGAATACATACTAAAGAGAAACcgttcaaatgtaatttttgtgtttatagcAGCAGTCAAGCCGGCAACTTAGTACAGCACATGTTCAAACATTCTGGAGAGAAGCGTTTCAGCTGCGATAAGTGCGACTACAGGTCTAACAGCAAACGTAATTTAAATGAGCACAAAAGAACACATACTCGGGAAAAACCGTTTGAATGTAATTTCTGCGGTTATTGCTGCAGTCATGCCGGCAACTTGAGGAAgcacatgtacaaacattcCGAAGAGAAGCCTTTCGCTTGTAATAAGTGCGACTACAGGTGTCgccaaaaatatcatttaattcgGCACAATAAAACGCACactcaagaaaaaccgtttacGTGTCATTTCTGCGGTTATAGGTGCAGTCGAAAAGAGTACTTAATCAAACACATTTACAAACATTCTGGAGAGAAACCTTTCAGCTGTGATGAGTGCAACTACAGGTGCCGCCAGAAACGTAGTTTAATTCGGCACAACAGAATACACACTCAAGAGAAACCGTTTAAGTGTGATTTTTGTGATTATAGTAACATTCATGAAGGCAACTTAATACAGCACATGTTTAAACATACTGAAAAGAAGCCGTTCAGCTGTGAGAAGTGTAACTTCAGGTGtcgtcaaaaaagtaatttaattcaaCACGATAGAATACATACTCAAAAATACCcgtttcaatgtaatttttgtgattataacAGCAGTAATGCCGGCAACTTGAAAAAGCATATGCACACACATTCTGAAGAGAAGCCTTTCAGCTGTGAGAAGTGCAACTATAGGTGTCgacaaaaaagtagtttaattcGACACAACAGAACGCACACTCAAGAAAAACCCTTTatgtgtaatttttgtgattattgcagcagTGTATCCAGCAACCTGAAAAAgcacatgtacaaacattcGGGGGAGAAACCTTTCAACTGTGAAAAGTGCGACTACAAGTGTTGCAGCACAAGCACCGACATTCCTTTATATAATGAAGAAAGCATTtcggtaaacaatttttataattgtagtCAATGTAATTACGTTACTAACGACAAAAACGATTTAACCGATCATGTTTTCACTCACCGTTTTAATTGTGATCAATGCGGTTACACAACTTCCgataataatttgttgataaatCACGAACGAATACACCGCACAACCGGATATTTACAATGTAATGTTTGTGATTATATTTGTACAGAAAGTCATTCTTTAGACGAGCATCTCTTTTCTCATATTGACGTACGACTCGAAGATACTAATCGGCAACGATTGCAAACGATTAAACGTTCATTCGAATGTTATGGTTGTGGTTATAAGGCTATCAGCAAAtctactttgaaatttcatatgAGGACTCATAAAGAAACTGCGCGATTTTCGTGTAAAGCATGCGGTTTCGATGTGCACTCTAAAAATGCTTTGAAATCTCATGTGCATTCGCAGCAAATGTGGGTTCGAATaaacctaaattaa
- Protein Sequence
- MAETRRCQVCLEETVLHPLNNISTRHPELSNLPADEIPLCNKCKSVFVKEGGIDTKKHVSNLSLINNFALVNEENYIETIKEELVDVAIKTEIEGVVKEENVLFNTDMEWFSSSVILYYCYHCSYATNDKQMLTDHIFSHFFKCNLCSYATFDNSSLNKHKDVHINIASDEQLSRHNNEKRLKCNICGYSSNHASNLRRHVFKHSGEKPFSCDKCNYRCRQKHNLIRHSLKHTREKPFMCNYCDHRTTRKEHLTKHNMNKHSGEKSLVCDKSNSRYFLIHHNVTRTQEQLLKCNFCDYNSVYEDDLVKHMYQHSEEKRFRCDKCNYTCCKKSNLIRHIRIHTKEKPFKCNFCVYSSSQAGNLVQHMFKHSGEKRFSCDKCDYRSNSKRNLNEHKRTHTREKPFECNFCGYCCSHAGNLRKHMYKHSEEKPFACNKCDYRCRQKYHLIRHNKTHTQEKPFTCHFCGYRCSRKEYLIKHIYKHSGEKPFSCDECNYRCRQKRSLIRHNRIHTQEKPFKCDFCDYSNIHEGNLIQHMFKHTEKKPFSCEKCNFRCRQKSNLIQHDRIHTQKYPFQCNFCDYNSSNAGNLKKHMHTHSEEKPFSCEKCNYRCRQKSSLIRHNRTHTQEKPFMCNFCDYCSSVSSNLKKHMYKHSGEKPFNCEKCDYKCCSTSTDIPLYNEESISVNNFYNCSQCNYVTNDKNDLTDHVFTHRFNCDQCGYTTSDNNLLINHERIHRTTGYLQCNVCDYICTESHSLDEHLFSHIDVRLEDTNRQRLQTIKRSFECYGCGYKAISKSTLKFHMRTHKETARFSCKACGFDVHSKNALKSHVHSQQMWVRINLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -