Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010002556.1:99259-108337[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.14 7.4 7.4 2.7 1 23 128 150 128 150 0.98

2 29 0.038 2 9.3 2.6 1 23 156 178 156 178 0.97

3 29 0.067 3.4 8.5 9.4 1 23 184 206 184 206 0.98

4 29 0.00083 0.042 14.5 2.6 3 23 214 234 212 234 0.98

5 29 0.0028 0.14 12.8 4.6 1 23 240 262 240 262 0.99

6 29 0.0052 0.27 12.0 1.1 3 23 270 290 268 290 0.98

7 29 0.022 1.1 10.0 2.1 1 23 296 318 296 318 0.97

8 29 0.0017 0.086 13.5 2.4 1 23 324 346 324 346 0.98

9 29 0.00025 0.013 16.2 2.4 1 23 352 374 352 374 0.98

10 29 0.017 0.84 10.4 0.4 3 23 382 402 380 402 0.97

11 29 2.2e-05 0.0011 19.4 1.2 1 23 408 430 408 430 0.98

12 29 0.0073 0.37 11.5 5.5 1 23 436 458 436 458 0.98

13 29 0.0005 0.025 15.2 3.7 1 23 464 486 464 486 0.98

14 29 0.75 38 5.2 0.3 3 21 494 512 492 513 0.93

15 29 0.00024 0.012 16.2 1.0 1 23 520 542 520 542 0.99

16 29 0.0022 0.11 13.1 0.9 3 23 550 570 548 570 0.96

17 29 0.047 2.4 9.0 7.8 1 23 576 598 576 598 0.98

18 29 0.00021 0.01 16.4 0.8 1 23 604 626 604 626 0.98

19 29 0.00051 0.026 15.1 6.5 1 23 632 654 632 654 0.98

20 29 0.013 0.67 10.7 0.6 3 23 662 682 660 682 0.97

21 29 0.53 27 5.7 3.3 1 19 688 706 688 706 0.98

22 29 0.0015 0.074 13.7 1.2 1 23 788 810 788 810 0.97

23 29 0.3 15 6.4 0.6 2 23 817 838 816 838 0.96

24 29 0.31 16 6.4 1.6 1 22 861 882 861 882 0.94

25 29 0.00022 0.011 16.3 2.7 1 23 904 926 904 926 0.98

26 29 0.72 37 5.2 7.4 1 23 938 960 938 960 0.98

27 29 0.00029 0.015 15.9 4.8 1 23 970 992 970 992 0.97

28 29 0.00072 0.037 14.7 1.1 1 23 998 1020 998 1020 0.98

29 29 0.075 3.8 8.3 1.7 2 23 1027 1048 1026 1048 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.14	7.4	7.4	2.7	1	23	128	150	128	150	0.98
2	29	0.038	2	9.3	2.6	1	23	156	178	156	178	0.97
3	29	0.067	3.4	8.5	9.4	1	23	184	206	184	206	0.98
4	29	0.00083	0.042	14.5	2.6	3	23	214	234	212	234	0.98
5	29	0.0028	0.14	12.8	4.6	1	23	240	262	240	262	0.99
6	29	0.0052	0.27	12.0	1.1	3	23	270	290	268	290	0.98
7	29	0.022	1.1	10.0	2.1	1	23	296	318	296	318	0.97
8	29	0.0017	0.086	13.5	2.4	1	23	324	346	324	346	0.98
9	29	0.00025	0.013	16.2	2.4	1	23	352	374	352	374	0.98
10	29	0.017	0.84	10.4	0.4	3	23	382	402	380	402	0.97
11	29	2.2e-05	0.0011	19.4	1.2	1	23	408	430	408	430	0.98
12	29	0.0073	0.37	11.5	5.5	1	23	436	458	436	458	0.98
13	29	0.0005	0.025	15.2	3.7	1	23	464	486	464	486	0.98
14	29	0.75	38	5.2	0.3	3	21	494	512	492	513	0.93
15	29	0.00024	0.012	16.2	1.0	1	23	520	542	520	542	0.99
16	29	0.0022	0.11	13.1	0.9	3	23	550	570	548	570	0.96
17	29	0.047	2.4	9.0	7.8	1	23	576	598	576	598	0.98
18	29	0.00021	0.01	16.4	0.8	1	23	604	626	604	626	0.98
19	29	0.00051	0.026	15.1	6.5	1	23	632	654	632	654	0.98
20	29	0.013	0.67	10.7	0.6	3	23	662	682	660	682	0.97
21	29	0.53	27	5.7	3.3	1	19	688	706	688	706	0.98
22	29	0.0015	0.074	13.7	1.2	1	23	788	810	788	810	0.97
23	29	0.3	15	6.4	0.6	2	23	817	838	816	838	0.96
24	29	0.31	16	6.4	1.6	1	22	861	882	861	882	0.94
25	29	0.00022	0.011	16.3	2.7	1	23	904	926	904	926	0.98
26	29	0.72	37	5.2	7.4	1	23	938	960	938	960	0.98
27	29	0.00029	0.015	15.9	4.8	1	23	970	992	970	992	0.97
28	29	0.00072	0.037	14.7	1.1	1	23	998	1020	998	1020	0.98
29	29	0.075	3.8	8.3	1.7	2	23	1027	1048	1026	1048	0.97

Sequence Information

Coding Sequence: ATGTCGTGTACAATTTGTTTCGGTGAAGTTAAACAAGAACCCGGATTGCAATTGAACGACGACGTAATGTCGAAATCGAACTTGTTCGATTTGCCACCGGAAAAAGATCTGAGCATCACCGATAATCCGGTAGCTTGCGTTAAATGCAAGGACGAGGTCGAGTGTAATTACGAAACAAGTGACGAATTACGTCCACTCGATAAAAACGAACGGGAACTTGATAAAGACGAAATTAAGATCGAACGAACTGATATCGATTGTGTATTGTTTAAGAACGACGTCTCGTCGAGTACTGAAGAAGATGTTCAGcaCACGACAAAACGTGGCGAATGCGATTACAAATCCTTGGAACAGGCACGAATACAATCGGAAGAGAACCGATTTAAATGCGATTTGTGCGAATTCACGAGTAAATATTGGAATTCCGTAAAAACGCACAGGACGAAACATTCAATCGAAAAACGTTTCAGGTGCGAcaagtgcgattacaaaacAAATCGTACAAGTTGTTTGGTGTTACACGCGATAAGCCACACgaagaaaaaatggtttaaatgcAGTTTATGCGATTTCAGTTgtaaacactattattatttaaaaaaacattcgatGAAACATTTTGGCGAACAATCGTTCggctgcgacaagtgcgattaTAAAACCTATCACAAATCTTCGTTGGTAAAACATCTAAGAATTCATTCGAAAGAGAAAGCGTTTCGGTGCAGTTTGTGCGATTTCAGTTGTAATTACactaatttgttgaaaattcatATGAGGAAACATTCCGGTGAACAACCTTTCGGTTGTAACGAGTGTGATTACAAAACTCACAACAAACTTTATTTGGTGGCTCATATGAGAGTTCACTCGGATAGGAAACAGTTCAATTGCAATTGGTGCGGTTTCGATACCAAATATTTTAGGACGTTAAAACTGCACATGTTGAAACATTCCGGCGTACAACCTTTCAGCTGTgacaaatgcgattacaaaacttacaacaaattttatttggttacTCATATAAGACTTCACACGGAAAAGAaacagtttaaatgtaatttgtgcgGTTTCAGCACTAagtattctaataatttaaaaatacatttgacgAAACATTCCGGTTTACAACCTTTCggctgcgacaagtgcgattaTAAAACAATGTACAAATCTTATTTGGCGAAACATGTAATAATTCACTCGGAAGAGAAACGGTTTAAATGCGATTTGTGCGGTTTTAGCACTAAACATCCGAGTTCCTTAAGAGGTCACATGATGGTGCATTCTAACCAACGACGTTTCAGCTGTGGtaagtgcgattacaaaactaataaaaaatgtaatttaaagtcGCATACAAGGATTCACTTGGAAGAGAAACGGTTTCAATGCAATTTGTGCGATTTCCACACGAAGTATTCTAGTAACTTAAAAATGCATATGATAAACCATTCCGGCGAATTAACTTTCggctgcgacaagtgcgattaTAAAACCCATTTGAAAAGCGATTTGGTGTCGCACTTAATAATTTGCCCGGAAGAAAGGCggtttaaatgtaatatttgcgATTTCAGTAGTAAATATTCTAATGCCTTAAACGTGCATCTGATGAAACATTCTGGCGAAAAACCTTTCGGCTGTgacaaatgcgattacaaaaccAACCATAAATCTGCTTTAGCGAAACACATTGGTGTTCACTCGGAAGAGAAGCggtttaaatgcaatttgtgcGACTTCAACAGTAAACATTCGTattgtttaaagaaacatttgatTAAACACGACGGTAAGCAACTTTTCAGGTGTGACAATTGCGATTACAAAACGAACGTCAAATATTCGTTGGCGAGACACATGGAAGTTCATTCGGAAGGAAAAcgatttaaatgcaatttgtgcGGTTTCTGTAGTAAACATTctagttctttaaaaaaacatttgatgcTACATTCTATTGAACAACCTTTCGGCTGCGACAAGTGCAATTACAGAACCAACGTCGAATCTTCTTTGAAGAGGCACGTGGGAACTCACTCGGACGATAAGCAATTTCGATGCAATTTGTGCGCTTTCACGACTAAATATTCTCATTCTTTAAAAAGACATGATCCGAACGTCACCGAAAACTCATTTGCGTTCAAACAAATGCAAGCTGCAATAGATAACACAAAGATATTGTCGCACGctaagaaaaaaatccaagacgatttacataaaaatgtgattCGAACCGACGACACCGCTTTGTGTATCGAAGATTTCATTCCCGTACACATATTGTTTTCGGACCAACGTAGTTATGGCACCAACGACAAACGTAATGTAACCAACGAAATCTGCACGAATCGTTTCAAATGTAATCAATGCAAATACGTCACGACCGACGTATCTTCGTTGGAAACTCACAAAGAAAGTCACTTTATTAACGGATGTTTACAATGTTACGTTTGCGATTACACTTGCATAAAAATCGACGTGTTGGACGAGCATATGTATACGCATAATACCGCGGAGCTCTCGGCCTACATATCGAAAGGTCAGCAGCTATCGCAAAAGAGGGAGTATTTATTCGAATGCTATCATTGCGATTATAAGACGAACAGAAAGATTCCTTTTAAATTACACGTGAATACGTGTTTAAATGGAGAAAATGACGATCGACCCAAAGACACGGTTGTACAGTCACGTAAGTTATCTTTCAGCTGCGACGAGTGCGAATATCGAACTTCTCTCAAATCGTCTTTGAAACGTCATAGAAAAACGCACATGAAAccgaaacaattgaaaaaattcagaCCGTTTAAATGCAACAAGTGCAATTACAAAACTCATTCTGCGTACTGCTTGAGCAGTCACAATAGAATTCACAGGCTTAAACTTTCCGGCAAGTATCCTTTTGCATGCGACAAGTGCGATTATAAGACGTATTACAAACACGATTTGACGCGTCATCAACGAACTCATTCGGacgaaaaagaatttcaatgcAATTTATGTAATTACGGTAGCAATTCGTCGAAAGGTTTGACCACCCACATGCTTAAACATTCGGGCGAGTGTCCTATTCGTTGCAACGTTTGCGATTACGAAACGTTCTCCAAACGCAGATTGGTGCAGCATAAAAAAACTCATCCCGAAGAAATACACACGAACACTTAA
Protein Sequence: MSCTICFGEVKQEPGLQLNDDVMSKSNLFDLPPEKDLSITDNPVACVKCKDEVECNYETSDELRPLDKNERELDKDEIKIERTDIDCVLFKNDVSSSTEEDVQHTTKRGECDYKSLEQARIQSEENRFKCDLCEFTSKYWNSVKTHRTKHSIEKRFRCDKCDYKTNRTSCLVLHAISHTKKKWFKCSLCDFSCKHYYYLKKHSMKHFGEQSFGCDKCDYKTYHKSSLVKHLRIHSKEKAFRCSLCDFSCNYTNLLKIHMRKHSGEQPFGCNECDYKTHNKLYLVAHMRVHSDRKQFNCNWCGFDTKYFRTLKLHMLKHSGVQPFSCDKCDYKTYNKFYLVTHIRLHTEKKQFKCNLCGFSTKYSNNLKIHLTKHSGLQPFGCDKCDYKTMYKSYLAKHVIIHSEEKRFKCDLCGFSTKHPSSLRGHMMVHSNQRRFSCGKCDYKTNKKCNLKSHTRIHLEEKRFQCNLCDFHTKYSSNLKMHMINHSGELTFGCDKCDYKTHLKSDLVSHLIICPEERRFKCNICDFSSKYSNALNVHLMKHSGEKPFGCDKCDYKTNHKSALAKHIGVHSEEKRFKCNLCDFNSKHSYCLKKHLIKHDGKQLFRCDNCDYKTNVKYSLARHMEVHSEGKRFKCNLCGFCSKHSSSLKKHLMLHSIEQPFGCDKCNYRTNVESSLKRHVGTHSDDKQFRCNLCAFTTKYSHSLKRHDPNVTENSFAFKQMQAAIDNTKILSHAKKKIQDDLHKNVIRTDDTALCIEDFIPVHILFSDQRSYGTNDKRNVTNEICTNRFKCNQCKYVTTDVSSLETHKESHFINGCLQCYVCDYTCIKIDVLDEHMYTHNTAELSAYISKGQQLSQKREYLFECYHCDYKTNRKIPFKLHVNTCLNGENDDRPKDTVVQSRKLSFSCDECEYRTSLKSSLKRHRKTHMKPKQLKKFRPFKCNKCNYKTHSAYCLSSHNRIHRLKLSGKYPFACDKCDYKTYYKHDLTRHQRTHSDEKEFQCNLCNYGSNSSKGLTTHMLKHSGECPIRCNVCDYETFSKRRLVQHKKTHPEEIHTNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -