Ater014098.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002587.1:51929-54674[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00072 0.037 14.7 0.5 2 23 82 103 81 103 0.96 2 27 1.6 81 4.2 0.6 2 23 116 137 115 137 0.93 3 27 0.019 0.97 10.2 1.2 1 22 147 168 147 168 0.96 4 27 0.016 0.82 10.4 6.0 1 23 206 228 206 228 0.98 5 27 0.29 15 6.5 0.2 3 23 236 256 234 256 0.95 6 27 0.00027 0.014 16.0 1.8 1 23 262 284 262 284 0.98 7 27 0.0091 0.46 11.2 1.8 1 23 290 312 290 312 0.97 8 27 0.017 0.84 10.4 0.8 1 23 318 340 318 340 0.99 9 27 0.37 19 6.2 1.1 1 23 346 368 346 368 0.95 10 27 0.00016 0.0082 16.7 1.9 1 23 374 396 374 396 0.98 11 27 1 52 4.8 0.5 1 23 402 424 402 424 0.91 12 27 0.00016 0.0082 16.7 3.7 1 23 430 452 430 452 0.98 13 27 0.021 1.1 10.1 0.6 1 23 458 480 458 480 0.97 14 27 0.0062 0.32 11.7 0.6 1 23 486 508 486 508 0.99 15 27 0.25 13 6.7 0.6 1 23 514 536 514 536 0.95 16 27 0.00016 0.0082 16.7 1.9 1 23 542 564 542 564 0.98 17 27 0.012 0.59 10.9 0.8 1 23 570 592 570 592 0.97 18 27 0.00012 0.0062 17.1 3.8 1 23 598 620 598 620 0.98 19 27 0.021 1.1 10.1 0.6 1 23 626 648 626 648 0.97 20 27 0.00016 0.0082 16.7 3.7 1 23 654 676 654 676 0.98 21 27 0.013 0.66 10.7 0.8 1 23 682 704 682 704 0.97 22 27 0.0003 0.015 15.9 2.4 1 23 710 732 710 732 0.98 23 27 0.0012 0.06 14.0 2.3 1 23 738 760 738 760 0.97 24 27 0.0004 0.02 15.5 0.6 1 23 766 788 766 788 0.99 25 27 0.029 1.5 9.7 1.9 1 23 794 816 794 816 0.96 26 27 0.00022 0.011 16.3 1.3 1 23 822 844 822 844 0.98 27 27 4.1e-05 0.0021 18.6 1.9 1 23 850 872 850 872 0.98
Sequence Information
- Coding Sequence
- AtggaatttgatttaaacaacgATTCGAAGATAGACGTTCCGTGCATGATCGAGAATCCAGTCGCAGGAATTAAGATGGAACTCGACGGAACACACCAATTGtacataaaaaacgaaaacgttGCTAAAGAAGAAGTTATAGAGGAGTTTGCGGAAGATTCGATTAAGACGGAGGGAATTATCGACGACAAATGCGTGTCGTTTAACACCGACATGTCTTTGTGCATCGAAGAACGTATTTTGTATTGCGACGAATGTAATTACGGAACAAACGACAAACGTAATTTAACCGATCATATTTTTACACACCGTTTTAAATGTGATAATACGCATTGCGTATCCTTAACATGTAATGTTTGTAGTTTTACTTGCTTAGGAATTGATGCGTTGAATGAGCATATGTCTACACATATCGGTGCGCAAATAAGTGACGATTTATTCGAATGCCACGATTGTCGTCATGGCACAAATCGTAAAACTGCGTTGGAACTTCATGTGAAAACGTGTTTAATTGGACAAATTGCTAAGGCAAGATTACGAAGAGAACTTCGAAAATGTGAGTATTCAACTTCTAAGAAACGCATGTTTCGCAAGATAAAGCACAAATTCGTACCATTCGAATGCAGCTTGTGCGATTACACCACTAAACATCTGAATTGCttgaaaatacatttgaagAAACATTCGGGTGAACGTAATATtaactgcgacaaatgcgactacGAAACGTACAGCAAAATTCAATGGACGGATCACAAAATAATCCATTCTGAACATAAATCGTTTCGATGCAGTTTGTGCGATTTCACTACTAAACGCTCGAACGCGTTAAAAGTGCATTTGCAGAAACATTCGGGTGAAAGTAAATttagctgcgacaaatgcgactacaaaTCGTACAGCAAATATAAGTTGGCGAATCACAAGATAGTACATtctgaagaaaaacaatttaaatgcaCTTCGTGCGAGTTCATCGCAAAACGTCGGGGTGATTTAAGCGTACATTTGAAGCGACATTTGGGCGAACGtaattttagctgcgacaaatgcgactatAAAGCTTACACTCGCACTAGGTTGGCGGAACACAAAACGATCCATTCcgatgaaaaaacatttaaatgcaacTTGTGCGATTTCGGCACCAAACACCCGAACAACTTGAAAGttcatttgaaaatacattcggatgaacgtaattttatttgtgacaaATGCGACTTCAAAACATacagtaaacaaattttggcGAAACACGAAATAGTTCATTCCGAAGAAAAACCGTTTCGATGCAGTTTGTGCGATCACAGCACTAAACGTCGggccgatttaaaaaaacatttgttgagACATTCGGGTGAACGAAATTTTAAGTGCGTCATGTGCGATTACAAAACGTACACTCGCGCTAAATTAGCGGATCACAAAATCGTTCATTCCgaagaaaaaacgtttaaatgcAGTTTGTGCGAGTTCATCGCAAAACGTCGGGGTGATTTAAGCGTACATTTGAAGCGACATTTGGGCGAACGtaattttagctgcgacaaatgcgactatAAAGCTTACACTCGCGCTAGGTTGGCGGAACACAAAACGATCCATTCcgatgaaaaaacatttaaatgcaacTTGTGCGATTTCGGCACCAAACACCCGAACAACTTGAAAGTTCATTTGAAGATACATTCGGACGAATTCaattttagctgcgacaaatgcgattacaaaacgtACACTCGCGCTAAATTAGCGGATCACAAAATCGTTCATTCCgaagaaaaaacgtttaaatgcAGTTTGTGCGATCACAGCACTAAACGTCGggccgatttaaaaaaacatttgttgagACATTCGGGTGAACGAAATTTTAAGTGCGTCATGTGCGATTACAAAACGTACACTCGCGCTAAATTAGCGGATCACAAAATCGTTCATTCCGAAGAAAAACCGTTTCGATGCAGTTTGTGCGATCACAGCACTAAACGTCGggccgatttaaaaaaacatttgttgagACATTCGGGTGAACGAAATTTTAAGTGCGTCATGTGCGATTACAAAACGTACACTCGCGATAAATTAGCGGATCACAAAATCGTTCATTCCgaagaaaaaacgtttaaatgcAGTTTGTGCGATTTTCGGACTAAATACTCGAGCTCTTTAAAGGAACATTTGAAAATTCACTTGGGCGAACGtaattttagctgcgacaaatgcgactacaTGACATACAGCAAATATACTTTGACGAAACACAAAATAGTTCattcagaagaaaaaatatttaaatgcaatttgtgcGAGTTCGTCGCGAAACGTCAGGGTGATTTAAATCAACATTTGATGAGACATTCGGGCCAACGCaattttagctgcgacaaatgcgaatATAAAACGTACACTCGCTCTAAACTAGCGGATCATAAAACTGTCCATTCCGaacaaaaacgatttaaatgcaCTTTGTGCGATTTCGGCACTAAGTACTCCAACAACTTGAAGGCGCATTTGAAGATACATTTGcgtgaatataattttaactgCGACAAGTGTGACTATAAAACAAGCCGCAAAAGGAATCTGGCAAGACACGAAAGGGTCCATTTGgagaaaaattcatttcaatcCGATAACAGTACAAAAAAGTGTGAAGTTTTGGAAAAGTGCAATACCGGactgtaa
- Protein Sequence
- MEFDLNNDSKIDVPCMIENPVAGIKMELDGTHQLYIKNENVAKEEVIEEFAEDSIKTEGIIDDKCVSFNTDMSLCIEERILYCDECNYGTNDKRNLTDHIFTHRFKCDNTHCVSLTCNVCSFTCLGIDALNEHMSTHIGAQISDDLFECHDCRHGTNRKTALELHVKTCLIGQIAKARLRRELRKCEYSTSKKRMFRKIKHKFVPFECSLCDYTTKHLNCLKIHLKKHSGERNINCDKCDYETYSKIQWTDHKIIHSEHKSFRCSLCDFTTKRSNALKVHLQKHSGESKFSCDKCDYKSYSKYKLANHKIVHSEEKQFKCTSCEFIAKRRGDLSVHLKRHLGERNFSCDKCDYKAYTRTRLAEHKTIHSDEKTFKCNLCDFGTKHPNNLKVHLKIHSDERNFICDKCDFKTYSKQILAKHEIVHSEEKPFRCSLCDHSTKRRADLKKHLLRHSGERNFKCVMCDYKTYTRAKLADHKIVHSEEKTFKCSLCEFIAKRRGDLSVHLKRHLGERNFSCDKCDYKAYTRARLAEHKTIHSDEKTFKCNLCDFGTKHPNNLKVHLKIHSDEFNFSCDKCDYKTYTRAKLADHKIVHSEEKTFKCSLCDHSTKRRADLKKHLLRHSGERNFKCVMCDYKTYTRAKLADHKIVHSEEKPFRCSLCDHSTKRRADLKKHLLRHSGERNFKCVMCDYKTYTRDKLADHKIVHSEEKTFKCSLCDFRTKYSSSLKEHLKIHLGERNFSCDKCDYMTYSKYTLTKHKIVHSEEKIFKCNLCEFVAKRQGDLNQHLMRHSGQRNFSCDKCEYKTYTRSKLADHKTVHSEQKRFKCTLCDFGTKYSNNLKAHLKIHLREYNFNCDKCDYKTSRKRNLARHERVHLEKNSFQSDNSTKKCEVLEKCNTGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -