Ater015711.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Abscondita terminalis
Gene Symbol
-
Assembly
GCA_013368085.1
Location
JABVZW010002692.1:56361-58436[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00015 0.0077 16.8 0.8 1 23 89 111 89 111 0.99
2 21 0.00059 0.03 15.0 2.5 1 23 117 139 117 139 0.98
3 21 3.8e-05 0.0019 18.7 3.0 1 23 145 167 145 167 0.99
4 21 0.0026 0.13 12.9 2.4 1 23 173 195 173 195 0.97
5 21 8.3e-05 0.0042 17.6 3.6 1 23 201 223 201 223 0.99
6 21 0.00069 0.035 14.7 0.9 1 23 229 251 229 251 0.95
7 21 0.0029 0.15 12.8 4.3 2 23 258 279 257 279 0.98
8 21 0.0014 0.072 13.8 2.6 1 23 285 307 285 307 0.95
9 21 0.0021 0.11 13.2 4.9 2 23 314 335 313 335 0.97
10 21 0.0003 0.015 15.9 1.4 1 23 341 363 341 363 0.98
11 21 0.002 0.1 13.3 5.0 2 23 370 391 369 391 0.97
12 21 0.00042 0.021 15.4 2.4 1 23 397 419 397 419 0.98
13 21 3.8e-05 0.0019 18.7 3.0 1 23 425 447 425 447 0.99
14 21 0.061 3.1 8.6 2.6 1 23 453 475 453 475 0.98
15 21 0.00018 0.0092 16.6 5.2 1 23 481 503 481 503 0.99
16 21 0.00065 0.033 14.8 2.4 1 23 509 531 509 531 0.98
17 21 3.8e-05 0.0019 18.7 3.0 1 23 537 559 537 559 0.99
18 21 0.0014 0.072 13.8 2.6 1 23 565 587 565 587 0.95
19 21 0.0029 0.15 12.8 4.3 2 23 594 615 593 615 0.98
20 21 0.0028 0.14 12.8 3.2 1 23 621 643 621 643 0.97
21 21 7.1e-05 0.0036 17.9 3.2 1 23 649 671 649 671 0.99

Sequence Information

Coding Sequence
ATGGCCGAATCCGTAATAATAAAATGCGAAACTTATTCAGATAAAATTAAGCAGGAAATAAAATACGATGAAcacgatttaatattgaaaccAAAATTGGAGCCTCTTTCGGAAGATGATGCAAGCATCACCGATGCATCGTGCAAGGTGGAACCGTTCATGCAAACCGAATCGCATTACGTTAAAATGAATGACCCGATTAAGATTGAAGATCGCCCCCTGTTATATAACACCGAACGTATTCCGACAGGTACCTTATACTGTTATCAATGCAGTTTGTGCGATTTCGGCAGTAAACGCTTGAgcgatttaaaaatacatttgaataaaCATTCGGGCGAATATCGTTTCAGCTGCGACAAATGCGTATACAAAACTTACTCGAAATCTCTTTTGAAACAGCACCAAAGAGTTCATTCCGATTTGAAACCGTATAAATGCAGTTACTGTGAATACAGTTGTAGACAACCGACCGCTTTAAAAGTGCACTTGAATAAACATTCGGGCGAATATCGTTTCAGCTGCGACAAATGCGTATACAAAACTTACTCGAAATCTCTTTTGAGACGACACGAGAGACTccattcaaaaaagaaacacttcaAATGCGATTTGTGTGGTTTTAGTTGCAAAAAATCGGATAGTTTAAAAGTGCACTTGAATAAACATTCTGATAATTGTAGTTTTACTTGCGACAAATGCGAATACGTAACGTACTCCAAATATCTTTTGAAGCAGCACATGGGCGCTCATTCCGAACAGAAACCggttaaatgcaatttttgtgaATTCACTTGCAAATACTCGGCCAGCTTAAAACTGCACATGAAAAAACATTCGGACGAATGTACTTTTAGTTGCCACAAATGCGAATACGTAACGTACTCCAAATATCTTTTGAAGCAGCACATGGGCGCTCATTCCGAACAGAAACCggttaaatgcaatttatgtgACTTCAGCTGTCGACACTCTGCTAGCTTAAAACTTCATTTGAATAAACATTCTGATAATTGTAGTTTTACttgcgacaaatgcgattacaaGACGTACTCGAAACCTCTTTTGAAGCAACACGTACGAGTTCATAACGAAGCGAAATCGATCAAATGTAATTTGTGCGATTTCAGTTGTAAACATTCGGCGAGCTTAAAGTTGCATTTGAATAAACATTCGGGCGAATGTCCGTATAGTTGCGACAAATGCGTATACAAAACTTACTCGAAATCTCTTTTGAAACAGCACCAAAGAGTTCATTCCGATTTGAAACCGTATAAATGCAGTTACTGTGAATACAGTTGTAGACAACCGACCGCTTTAAAAGTGCACTTGAATAAACATGTGGTTGATTCTATTTTcagctgcgacaaatgcgaatACAAAACTTATTCTAAATCGATTTTGAGGCAGCACGAGAAAACTCATTCCGAGGTGAAACCATATAAATGCCACTTGTGTGATTTTAGCAGTAGACATTTGTCCAATTTAAATGTGCACTTGAATAAACATTCGGGCGAATGTCCGTATAATTGCGACAAATGCGTATACAAAACTTACTCGAAATCTCTTTTGAAACAGCACCAAAGAGTTCATTCCGATTTGAAACCGTATAAATGCAGTTACTGTGAATACAGTTGTAGACAACCGACCGCTTTAAAAGTGCACTTGAATAAGCATTCGACCGAATGTACTTTTAGTTGCCACAAATGCGAATACGTAACGTACTCCAAATATCTTTTGAAGCAGCACATGGGCGCTCATTCCGAACAGAAACCggttaaatgcaatttttgtgaATTCACTTGCAAATACTCGGCCAGCTTAAAACTGCACATGAAAAAACATTCGGACGAATGTACTTTTAGTTGCAAGAAATGCGAGTTCAACACCTACTCCAAATCTCTTTTGAGACGACACGAGAGACTccattcaaaaaagaaacacttcaAATGCGATTTGTGTGGTTTTAGTTGCAAAAAATCGGATAGTTTAAAAGTGCACTTGTCAACACATTCTAGTGAGTGA
Protein Sequence
MAESVIIKCETYSDKIKQEIKYDEHDLILKPKLEPLSEDDASITDASCKVEPFMQTESHYVKMNDPIKIEDRPLLYNTERIPTGTLYCYQCSLCDFGSKRLSDLKIHLNKHSGEYRFSCDKCVYKTYSKSLLKQHQRVHSDLKPYKCSYCEYSCRQPTALKVHLNKHSGEYRFSCDKCVYKTYSKSLLRRHERLHSKKKHFKCDLCGFSCKKSDSLKVHLNKHSDNCSFTCDKCEYVTYSKYLLKQHMGAHSEQKPVKCNFCEFTCKYSASLKLHMKKHSDECTFSCHKCEYVTYSKYLLKQHMGAHSEQKPVKCNLCDFSCRHSASLKLHLNKHSDNCSFTCDKCDYKTYSKPLLKQHVRVHNEAKSIKCNLCDFSCKHSASLKLHLNKHSGECPYSCDKCVYKTYSKSLLKQHQRVHSDLKPYKCSYCEYSCRQPTALKVHLNKHVVDSIFSCDKCEYKTYSKSILRQHEKTHSEVKPYKCHLCDFSSRHLSNLNVHLNKHSGECPYNCDKCVYKTYSKSLLKQHQRVHSDLKPYKCSYCEYSCRQPTALKVHLNKHSTECTFSCHKCEYVTYSKYLLKQHMGAHSEQKPVKCNFCEFTCKYSASLKLHMKKHSDECTFSCKKCEFNTYSKSLLRRHERLHSKKKHFKCDLCGFSCKKSDSLKVHLSTHSSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-