Ater015720.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010002692.1:86233-89047[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0013 0.066 13.9 1.2 2 23 85 106 84 106 0.97 2 27 0.0056 0.29 11.9 0.7 1 20 108 127 108 128 0.96 3 27 2.8 1.5e+02 3.4 0.8 2 20 199 217 199 219 0.91 4 27 5.6e-05 0.0028 18.2 0.7 1 23 239 261 239 261 0.98 5 27 0.0076 0.39 11.5 4.3 1 23 267 289 267 289 0.95 6 27 4.8e-05 0.0025 18.4 3.2 1 23 295 317 295 317 0.99 7 27 0.0081 0.41 11.4 2.0 1 23 323 345 323 345 0.95 8 27 9.4e-06 0.00048 20.6 1.0 1 23 351 373 351 373 0.98 9 27 0.005 0.26 12.0 2.0 1 23 379 401 379 401 0.95 10 27 0.00012 0.006 17.2 3.3 1 23 407 429 407 429 0.98 11 27 0.005 0.26 12.0 2.0 1 23 435 457 435 457 0.95 12 27 0.00012 0.006 17.2 3.3 1 23 463 485 463 485 0.98 13 27 0.0081 0.41 11.4 2.0 1 23 491 513 491 513 0.95 14 27 0.0007 0.036 14.7 2.9 1 23 519 541 519 541 0.98 15 27 0.005 0.26 12.0 2.0 1 23 547 569 547 569 0.95 16 27 5.8e-05 0.003 18.1 2.6 1 23 575 597 575 597 0.98 17 27 0.0074 0.38 11.5 4.0 1 23 603 625 603 625 0.95 18 27 0.00015 0.0075 16.9 2.5 1 23 631 653 631 653 0.98 19 27 0.054 2.8 8.8 1.4 3 23 661 681 659 681 0.94 20 27 5.8e-05 0.003 18.1 2.6 1 23 687 709 687 709 0.98 21 27 0.005 0.26 12.0 2.0 1 23 715 737 715 737 0.95 22 27 0.00028 0.014 16.0 3.7 1 23 743 765 743 765 0.98 23 27 0.017 0.89 10.3 1.7 1 23 771 793 771 793 0.94 24 27 0.00032 0.016 15.8 3.3 1 23 799 821 799 821 0.98 25 27 0.005 0.26 12.0 2.0 1 23 827 849 827 849 0.95 26 27 5.8e-05 0.003 18.1 2.6 1 23 855 877 855 877 0.98 27 27 0.0074 0.38 11.5 4.0 1 23 883 905 883 905 0.95
Sequence Information
- Coding Sequence
- atggaatttgatttaaacaacgACgCTCCGTGCATGGGCGAGAATCCTGTCGCAGGCAACAAAATTAAGATGGAAAGCGACGAAACACATCAATCGTGTATGCACAACGAGAGTGTACTACAGCTTCTggttaaagaagaaattaaacagGAAGATTCGATTAAGACGGAGGGAATTATTGATGATGAATGCGTGTCGTTTAACACCGACATGTCTTTATGCATTGAAGAACGTATTCCggtaaatattatgtattgcGAGCAATGTAATTACGGCACGAACGACAAAAGTCATTTAATCGATCATATTTTTACGCATCGTTTCAAATGTAATGAATGCGATTACACAACTCCTGAAAAATCCATGTTAATAACTCACACGCATGACGTATGTAACGTTCGTAATTGCTTAGGAATTGATGTTTTGAATGAACATATGTCTTTAGATTACCTTTCTACGAAACAAGAGAAATATCGAGAGCCGACACAAATAAACGAATGCCACGATTGTCTTTATAGTACAAATAGTAAATCCACCCCGAAAAAGTGTTTAAACGGTCAACTTGCTAAGGCGACATTACGAACACAACTTAGGAAGTGTGAAAAATGTGAGTACTCAACATctgaaacaaaatacttaaGCATGCATGCATGCTATGACAAATGCGACTACGAAACTCATCACAAGCACAAATTGATTGAAGACAAAAAACCATTCGAATGCAGTTTGTGCGATTACAGCGCTAAACGCCAGAGTCAATTAAAAGTACATTTGACGATGCATTCGGGCGAGCGtaattttagctgcgacaaatgcgactacaCAACATTCAGCAAAAACCACTTGACGAAACACAAAGTAGTTCATTCTGAACGGAAACCATTTCAATGCAGTTTGTGCGATTTCAGCACTAGACACCGGAGTTCTTTAAAAGTGCACTTGAGAATACATTCGGGTCAACGtaattttagctgcgacaagtgcgactacacaacatacaaaaaaactCAGTTGACGGATCACAAAGTAGTACATTCTGAACAAAAACCTTTTGAATGCAGTTTGTGCGATTACAGCGCTAAACGCCAGAGTCAATTAAAAGTTCATTTGAAGACACATTCGGGCGAACGtaattttagctgcgacaaatgcgactacaCAACATTCAGCAAAAACCAGTTGACGAATCACAAAGTAGTTCATTCTGAACAAAAACCATTTCAATGCAGTTTGTGCGATTTCAGCACTAGACACCGGAGTTCTTTAAAAGTGCACTTGAAAATACATTCGGGTCAACGtaattttagctgcgacaagtgcgactacacAACATTCAGCAAAAACCAGTTGACGAATCACAAAGTAGTTCATTCTGAACAAAAACCATTTCAATGCAGTTTGTGCGATTTCAGCACTAGACACCGGAGTTCTTTAAAAGTGCACTTGAAAATACATTCGGGTCAACGtaattttagctgcgacaagtgcgactacacaacatacaaaaaaactCAGTTGACGGATCACAAAGTAGTTCATTCTGAACAAAAACCTTTTGAATGCAGTTTGTGCGATTTCAGAGCTAAACGCCGGAGTcacttaaaattacatttgaagATACATTCGGGCGAACGtaattttagctgcgacaaatgcgactacaCAACATTCAGCAAAAACCAGTTGACGAATCACAAAGTAGTTCATTCTGAACAAAAACCATTTGAATGCAGTTTGTGCGATTTTAGCACTAGACACCGGAGTTCTTTAAAAGTGCACTTGAGAATACATTCGGGTCAACGtaattttagctgcgacaaatgcgactacaCAACATTCAACAAACACCAATTGACGAATCACAAAGTAGTTCATTCTGAACAAAAACCTTTTGAATGCAGTTTGTGCGATTTCAGCACTAAACATCGGAGTTCTTTAACAGTGCATTTGAAAATACATTCGGGTGAACGTAATTTTggctgcgacaagtgcgactacaaaacaTTCAGCAAAAACCAGTTGACGAATCACAAAGTAGTTCATTCTGAACAAAAACCATTTGAATGCAGTTTGTGCGATTTTAGCACTAGACACCGGAGTTCTTTAAAAGTGCACTTGAGAATACATTCGGGTCAACGtaattttagctgcgacaaatgcgactacaCAACATTCAGTAAAAACCAGTTGACGAATCACAAAGTAGTTCATTCTGAACAAAAACCTTTTGAATGCAGTTTGTGCAATTTTAGCACTAGACACCGGAGTTCTTTAAAAATGCACTTGAGAATACATTCGGGTCAACGtaattttagctgcgacaaatgcgactacaaaacaTTCAGTAAAATCCAGTTGACGAATCACAAAGTAGTTCATTCTGAACAAAAACCTTTTGAATGCAGTTTGTGCGATTTTAGCACTAGACACCGGAGTTCTTTAAAAATGCACTTGAAAATACATTCGGGTCAACGtaattttagctgcgacaaatgcgactacaCAACATTCAGTAAAAACCAGTTGACGAATCACAAAGTAGTTCATTCTGAACAAAAACCTTTTGAATGCAGTTTGTGCGATTTTAGCACTAGACACCGGAGTTCTTTAAAAGTGCACTTGAGAATACATTCGGGTCAACGtaattttagctgcgacaaatgcgactacaCAACATTCAACAAACACCAGTTGACGAATCACAAAGTAGTTCATTCTGAACAAAAACCTTTTGAATGCAGTTTGTTACTAAACGTACATTGA
- Protein Sequence
- MEFDLNNDAPCMGENPVAGNKIKMESDETHQSCMHNESVLQLLVKEEIKQEDSIKTEGIIDDECVSFNTDMSLCIEERIPVNIMYCEQCNYGTNDKSHLIDHIFTHRFKCNECDYTTPEKSMLITHTHDVCNVRNCLGIDVLNEHMSLDYLSTKQEKYREPTQINECHDCLYSTNSKSTPKKCLNGQLAKATLRTQLRKCEKCEYSTSETKYLSMHACYDKCDYETHHKHKLIEDKKPFECSLCDYSAKRQSQLKVHLTMHSGERNFSCDKCDYTTFSKNHLTKHKVVHSERKPFQCSLCDFSTRHRSSLKVHLRIHSGQRNFSCDKCDYTTYKKTQLTDHKVVHSEQKPFECSLCDYSAKRQSQLKVHLKTHSGERNFSCDKCDYTTFSKNQLTNHKVVHSEQKPFQCSLCDFSTRHRSSLKVHLKIHSGQRNFSCDKCDYTTFSKNQLTNHKVVHSEQKPFQCSLCDFSTRHRSSLKVHLKIHSGQRNFSCDKCDYTTYKKTQLTDHKVVHSEQKPFECSLCDFRAKRRSHLKLHLKIHSGERNFSCDKCDYTTFSKNQLTNHKVVHSEQKPFECSLCDFSTRHRSSLKVHLRIHSGQRNFSCDKCDYTTFNKHQLTNHKVVHSEQKPFECSLCDFSTKHRSSLTVHLKIHSGERNFGCDKCDYKTFSKNQLTNHKVVHSEQKPFECSLCDFSTRHRSSLKVHLRIHSGQRNFSCDKCDYTTFSKNQLTNHKVVHSEQKPFECSLCNFSTRHRSSLKMHLRIHSGQRNFSCDKCDYKTFSKIQLTNHKVVHSEQKPFECSLCDFSTRHRSSLKMHLKIHSGQRNFSCDKCDYTTFSKNQLTNHKVVHSEQKPFECSLCDFSTRHRSSLKVHLRIHSGQRNFSCDKCDYTTFNKHQLTNHKVVHSEQKPFECSLLLNVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -