Basic Information

Insect: Abscondita terminalis
Gene Symbol: -
Assembly: GCA_013368085.1
Location: JABVZW010001374.1:321834-326691[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 4.1e-06 0.00021 21.8 2.3 2 23 24 45 23 45 0.97

2 19 0.0038 0.19 12.4 4.0 1 23 51 74 51 74 0.94

3 19 0.097 4.9 8.0 0.2 1 11 81 91 81 97 0.87

4 19 1.3e-05 0.00064 20.2 3.0 1 23 115 137 115 137 0.98

5 19 1.3e-05 0.00064 20.2 4.0 1 23 145 167 145 167 0.98

6 19 0.0049 0.25 12.1 0.2 2 23 174 195 173 195 0.96

7 19 2.7e-07 1.4e-05 25.5 1.3 1 23 201 223 201 223 0.98

8 19 8e-07 4.1e-05 24.0 0.9 1 23 229 251 229 251 0.99

9 19 0.19 9.8 7.0 5.4 1 23 257 280 257 280 0.94

10 19 0.0028 0.14 12.8 4.0 1 20 294 313 294 316 0.94

11 19 1.5e-06 7.8e-05 23.1 3.1 1 23 322 345 322 345 0.97

12 19 0.00038 0.019 15.6 0.9 1 23 351 373 351 373 0.98

13 19 0.0051 0.26 12.0 0.3 3 23 381 402 379 402 0.95

14 19 4.9e-07 2.5e-05 24.6 1.3 1 23 407 429 407 429 0.98

15 19 1.5e-06 7.8e-05 23.1 3.7 1 23 439 461 439 461 0.99

16 19 8.7e-05 0.0044 17.6 1.4 1 23 467 489 467 489 0.96

17 19 0.00052 0.026 15.1 3.8 1 23 495 517 495 517 0.98

18 19 3.4e-07 1.7e-05 25.2 0.5 1 23 523 545 523 545 0.99

19 19 0.14 7.2 7.5 4.7 1 23 551 574 551 575 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	4.1e-06	0.00021	21.8	2.3	2	23	24	45	23	45	0.97
2	19	0.0038	0.19	12.4	4.0	1	23	51	74	51	74	0.94
3	19	0.097	4.9	8.0	0.2	1	11	81	91	81	97	0.87
4	19	1.3e-05	0.00064	20.2	3.0	1	23	115	137	115	137	0.98
5	19	1.3e-05	0.00064	20.2	4.0	1	23	145	167	145	167	0.98
6	19	0.0049	0.25	12.1	0.2	2	23	174	195	173	195	0.96
7	19	2.7e-07	1.4e-05	25.5	1.3	1	23	201	223	201	223	0.98
8	19	8e-07	4.1e-05	24.0	0.9	1	23	229	251	229	251	0.99
9	19	0.19	9.8	7.0	5.4	1	23	257	280	257	280	0.94
10	19	0.0028	0.14	12.8	4.0	1	20	294	313	294	316	0.94
11	19	1.5e-06	7.8e-05	23.1	3.1	1	23	322	345	322	345	0.97
12	19	0.00038	0.019	15.6	0.9	1	23	351	373	351	373	0.98
13	19	0.0051	0.26	12.0	0.3	3	23	381	402	379	402	0.95
14	19	4.9e-07	2.5e-05	24.6	1.3	1	23	407	429	407	429	0.98
15	19	1.5e-06	7.8e-05	23.1	3.7	1	23	439	461	439	461	0.99
16	19	8.7e-05	0.0044	17.6	1.4	1	23	467	489	467	489	0.96
17	19	0.00052	0.026	15.1	3.8	1	23	495	517	495	517	0.98
18	19	3.4e-07	1.7e-05	25.2	0.5	1	23	523	545	523	545	0.99
19	19	0.14	7.2	7.5	4.7	1	23	551	574	551	575	0.95

Sequence Information

Coding Sequence: ATGTACGATAATCCAAGaacCATTTTTCTGATCCAACCTCTACCATTAACTTATACCGAACCCATTATTCAGTGTCACATTTGCTGGAAAAAGTTCAAGTACGCTTCAGGTTTAAAGCATCACATGGCAGTTCATTCCGACGAAAGACCTCACTCTTGTGACCTGTGTTCTAAAACTTTCAAGCTCAAATATGCACTCGCTCATCATAAAACTATGGTGCACGATAACACTACTAGTAATCACACGTGCGATATATGCAATagaagttttaaacttttaaggACgtttttatttaagcACGAAGTTGTTAATCACAATTTGAGAGAACACGAAATGGTCACTTACCAATGTCACGTTTGTGAGAAGAAATTTGTGGACAAGAAGTATTTGGTACAACACTTGAAGCTTCACAACGAAGGACGCACAAAAGATTTTCGATGTACTTTGTGCGACAGAtctttttctcataaaaattcACTGGTGTGGCATTATAAATCACATAGCGGTGAAAACACTCAGGTTTGCGAGATCTGCGGTAAATCAGTATTGTCCATGCAAAGTCTTAAAAATCACATGATGCTGCACAGAGGAGAAAAACCTTTCAAGTGTAAGGAGTGTGGAAAGACGTTTTCAACTAGGAACTATCTAGCAGTCCATACGCGTGCCCACACTGGTGTTAAACCCTATAAGTGCGAAACTTGTGCAAAAGCTTTTACTCAACGTTCTTCTTTGGTCGTACATATGCGATACCATACGGGAGAGAAACCTTACTGTTGCGACTTGTGCGATAGAAGATTTGTGACGAAGACATTgatgaattttcataaaaaaactaaacacgGTATTGCTTTgtTAATCAACACAAATTCCAACAATATACACCAATGCAACGTCTGTTGGAAGACGTTCGCTAAGAGCAGGTATTTAAAACTGCATTTGATTTGTCACAGTGGTGAAAAACCGTTTCCATGCGAAGTCTGTCAAAAACGATTTCCTCGCTCTTATACACTTAAAGTTCACATGAGAAGGTGTCATGGTAGTCAGGATGGTTACAAGTGCGAAACGTGTGGACGAAAGGTTAAGTCTAAACAGCAACTGGACTTACACGTACTTCGGCATTTAAAACAGTATACTTCACACTGTCCACTTTGCAACAAAGGTTTTTATAATGCGGCGGAACAGAGATTGCACATCGCCAAAGTTCACGAAGAGGTCGTACACGAGTGTAAAATTTGCGGCAAACCTTTGAAGCAACAAAGCTCTTTAAAAACTCACATGGCGACTCACACCGATGGATACTCATCCAGTAAGAAATTCAAATGCACTGAGTGTGACAAAGCCTTTCATTACAAATCGTCTTTGAACTTGCACATAAAAACACACAGCACCAATAATTTGTACTTGTGTCAAGTGTGCGGCAAACAGTATACTTATTTGAGGCACTTGCAAGAACATTTGATGGTTCACGGCGATCAAAAACCCCACAAATGCGAGATTTGCAAAAAGGGTTTCCATAAAGTTGTAAATTTGCGAATTCATGAGCGTACGCATACCGGTGTAAAGCCGTACAAGTGCGAGATTTGCGGAAAAACTTTTAGTCAACGACCTCCTTTGAAcgtccatttaaaaaaacacactgGGGTGAAACCTTTCAAATGCGATTTatgtaaaatgaatttttttaccaaaagttTGATGGATattcataagaaaaataaacatcacgttttgttagaaaaaactacgaaataa
Protein Sequence: MYDNPRTIFLIQPLPLTYTEPIIQCHICWKKFKYASGLKHHMAVHSDERPHSCDLCSKTFKLKYALAHHKTMVHDNTTSNHTCDICNRSFKLLRTFLFKHEVVNHNLREHEMVTYQCHVCEKKFVDKKYLVQHLKLHNEGRTKDFRCTLCDRSFSHKNSLVWHYKSHSGENTQVCEICGKSVLSMQSLKNHMMLHRGEKPFKCKECGKTFSTRNYLAVHTRAHTGVKPYKCETCAKAFTQRSSLVVHMRYHTGEKPYCCDLCDRRFVTKTLMNFHKKTKHGIALLINTNSNNIHQCNVCWKTFAKSRYLKLHLICHSGEKPFPCEVCQKRFPRSYTLKVHMRRCHGSQDGYKCETCGRKVKSKQQLDLHVLRHLKQYTSHCPLCNKGFYNAAEQRLHIAKVHEEVVHECKICGKPLKQQSSLKTHMATHTDGYSSSKKFKCTECDKAFHYKSSLNLHIKTHSTNNLYLCQVCGKQYTYLRHLQEHLMVHGDQKPHKCEICKKGFHKVVNLRIHERTHTGVKPYKCEICGKTFSQRPPLNVHLKKHTGVKPFKCDLCKMNFFTKSLMDIHKKNKHHVLLEKTTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -