Ater007230.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- -
- Assembly
- GCA_013368085.1
- Location
- JABVZW010001374.1:389286-397106[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00092 0.047 14.3 0.7 2 23 34 55 33 55 0.97 2 23 0.00027 0.014 16.0 5.0 1 23 61 84 61 84 0.96 3 23 0.17 8.8 7.2 0.1 1 17 91 107 91 108 0.94 4 23 0.0021 0.11 13.2 0.6 2 23 118 139 117 139 0.97 5 23 5.3e-06 0.00027 21.4 1.4 1 23 145 168 145 168 0.97 6 23 0.002 0.1 13.3 0.5 3 23 176 196 174 196 0.97 7 23 0.031 1.6 9.5 4.2 1 23 202 225 202 226 0.95 8 23 0.00011 0.0055 17.3 0.2 1 23 230 252 230 252 0.98 9 23 0.00067 0.034 14.8 2.6 1 23 260 282 260 282 0.98 10 23 2.3e-05 0.0012 19.4 0.7 3 23 288 308 286 308 0.97 11 23 7.2e-08 3.7e-06 27.3 1.4 1 23 314 336 314 336 0.99 12 23 1.3e-06 6.5e-05 23.3 3.0 1 23 342 364 342 364 0.97 13 23 0.0022 0.11 13.2 0.9 1 21 370 390 370 391 0.95 14 23 0.00027 0.014 16.0 3.4 2 23 411 432 410 432 0.96 15 23 0.021 1.1 10.0 0.2 1 23 452 474 452 474 0.97 16 23 0.045 2.3 9.0 1.4 1 23 506 529 506 529 0.95 17 23 0.0018 0.094 13.4 2.1 1 23 535 557 535 557 0.97 18 23 0.00022 0.011 16.3 1.3 1 23 563 586 563 586 0.97 19 23 2.2e-05 0.0011 19.5 0.5 2 23 598 619 597 619 0.98 20 23 1.3e-06 6.7e-05 23.3 0.4 3 23 633 653 631 653 0.96 21 23 6e-05 0.0031 18.1 2.0 1 23 659 681 659 681 0.98 22 23 7.8e-06 0.0004 20.9 1.1 1 23 687 709 687 709 0.98 23 23 0.029 1.5 9.7 0.3 1 20 715 734 715 736 0.93
Sequence Information
- Coding Sequence
- ATGCGTAGGATATCTGGGCGGAAGTTTGATAGAATGAATGTTGGTTCAGAGAGATTGATTGCGGATAGAGAGTCTGACCTTCAATTGCGATTTGCCAATCAATGCgacgtttgtttaaaaatcttttcCAAACGTCGAGctttaaacaaacataaaattgttcACGCTAACGACAAACCGTTTTCTTGTAACGTATGCCAGTCGCATTTTAAGCGGAAAGACTCGCTGAAAACTCACAtgcaaaattttcatcaaaaaaacgAACATCGATACCATTGTGAAGTGTGCAACGAGGGCACCACGTCAAAACGAAATTTGAGgATTTCCGGCGCTGCGTTGCGTTTTGAAAATCAATGCGACGTCTGCTTAAGAATCTTTTCCGAAAAGAAGGCTTTGAACAATCACAAAATCACGCACACCGACGTGAGACCATTTTCTTGCGAACTATGTCAAACTCCGTTTAAGCGAAGAAGCTCTCTGAACACTCACATGAAAAACATTCACCAAAAGAAAAATCGTTATTGGTGCGTTGAATGCTACAGAAGCGTCTCGTCGAAACAGGCACTGAAGATGCACATGAACCgtcacaacaaaaaattcgcTTTCGAATGTTTGCTATGCCGTAAACAGTTTTACACGAAAGGCGATGTTAAACATCACGTCTCTAGGATTCACCATAACGTCGtgtataaatgcaaaatttgcgACAAGCCTCTTGCTTCCAAGAACTCTTTGGCCGATCACGAAAAAATTCACAATCCGTTTCAGAATTTAAGTTATAAGTGTGAGGTGTGCGGGAAATTTTTCGGACACAAGCGAATTTTAACCCAACATTTGAAACTGCACGGAGATAAAGTGATTTGTCATATTTGCGGTAAAAATTTAtccactaaaaaaagtttggtcGACCATCTAAGAGTTCATGACGATGTGAAAGCTTACAAGTGCGAAGAGTGCGACAAGAATTTTGGAACGCAAAGTTCATTGCGATCACATCTTCGTACTCACTCAGGTGTGAAGCCTTACTGTTGCGAAACGTGCGGAAAGGCTTTTAGTCACAAGTCTAATTTAGTGATTCACGTGAGGCTGCATACCGGAGAGAAACCGTATCAATGCGATTTATGCGATTGTACTTATGTCAGCAAACCTTTGCTGAGGACTCACGTGAAAAATAACATTCAAGCGATTAAATTTGAACAGTCTATGAAGCACGGTGGAAAACAGATTTGGTGCTGCAAAAAATGCAACGAAGTGTATTCGACTTCGCGTCAATTGCGGGATCATCGTAAAATACATCGCAAGGAGTACAACGACACGCATTACAACTACCATTATGACGAAAGCAAAGATGTCTTTGCGTGTTTTACGTGCGACCTCGAATACAAAACTCAAGAAGAAATCGTAACGCATGTGTTGACGCACGAAGACAAGTTTGCCTGCAGTATTTGCAACGAAATATTCCTAAAACCACACGAATATTCGTGCCATTTGTTCAACCACGATCAATCTAAAGGTTTTTTGTGTCCGTTTTGCGACTACTCCACTCACAGACGTACCGCGATTATGATCCATATCAATACATTTCATTTGAggaaatatatttacaattgcTCGCAGTGCGGAAAAGGCTTCAACGATTGCGTAATGTTCAAGGAGCACAATAACATACACGAAGGCCTCAAACCGTTTCGCTGTGTTGTTTGCAGTAAGGATTTTGCCTTCTCCAGTTATCTGACATCACACCAACTTCGGAACCATAAGGTCACTATCGATGGAATGATCGGTTCGAATCAGTGTGTCGTTTGCTATAAAACATTTGCTAGGAAAAACGCGTTTGAAGCTCACATGCAGACGCATTCTTTGAGCCATAAGAAAGTGCACGAGAAAAAGCATTTATGCGACATTTGCGGAAAAGGTTTTTCTCGAAACGAGAAATTGCGAATACATTACAGAGTTCATACTGGAGTTAAACCCTATTCGTGTTCGTACTGCAGCAAAAGTTTTACCAAGAGAGATTATATGATCATGCACGAACGTGTGCATAGCGGCGAGAAACCTTACTCGTGCGAATACTGCGGGAAGTGTTTTAACCAAGGCGCTCCACTGAGGTTGCATATTCGAAGTCATACCGGAGAAAGACCATACAGATGCCATATTTGTAACTCTGGGTTTATTTCGAGGGGCGTGCTCAATCTACATTATAGTAGCTGTCGTGGACGGTCAAATTAA
- Protein Sequence
- MRRISGRKFDRMNVGSERLIADRESDLQLRFANQCDVCLKIFSKRRALNKHKIVHANDKPFSCNVCQSHFKRKDSLKTHMQNFHQKNEHRYHCEVCNEGTTSKRNLRISGAALRFENQCDVCLRIFSEKKALNNHKITHTDVRPFSCELCQTPFKRRSSLNTHMKNIHQKKNRYWCVECYRSVSSKQALKMHMNRHNKKFAFECLLCRKQFYTKGDVKHHVSRIHHNVVYKCKICDKPLASKNSLADHEKIHNPFQNLSYKCEVCGKFFGHKRILTQHLKLHGDKVICHICGKNLSTKKSLVDHLRVHDDVKAYKCEECDKNFGTQSSLRSHLRTHSGVKPYCCETCGKAFSHKSNLVIHVRLHTGEKPYQCDLCDCTYVSKPLLRTHVKNNIQAIKFEQSMKHGGKQIWCCKKCNEVYSTSRQLRDHRKIHRKEYNDTHYNYHYDESKDVFACFTCDLEYKTQEEIVTHVLTHEDKFACSICNEIFLKPHEYSCHLFNHDQSKGFLCPFCDYSTHRRTAIMIHINTFHLRKYIYNCSQCGKGFNDCVMFKEHNNIHEGLKPFRCVVCSKDFAFSSYLTSHQLRNHKVTIDGMIGSNQCVVCYKTFARKNAFEAHMQTHSLSHKKVHEKKHLCDICGKGFSRNEKLRIHYRVHTGVKPYSCSYCSKSFTKRDYMIMHERVHSGEKPYSCEYCGKCFNQGAPLRLHIRSHTGERPYRCHICNSGFISRGVLNLHYSSCRGRSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -