Ater013459.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Abscondita terminalis
Gene Symbol
-
Assembly
GCA_013368085.1
Location
JABVZW010002556.1:180354-185628[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 47 0.016 0.82 10.4 0.8 1 23 115 137 115 137 0.97
2 47 0.0036 0.18 12.5 1.3 1 23 139 161 139 161 0.98
3 47 0.063 3.2 8.6 4.6 3 23 168 188 166 188 0.98
4 47 0.00029 0.015 15.9 7.1 1 23 194 216 194 216 0.98
5 47 0.0039 0.2 12.4 3.6 3 23 224 244 222 244 0.98
6 47 0.087 4.4 8.1 8.3 1 23 250 272 250 272 0.98
7 47 0.0064 0.33 11.7 4.3 1 23 278 300 278 300 0.96
8 47 0.0012 0.061 14.0 6.9 1 23 306 328 306 328 0.98
9 47 0.00089 0.045 14.4 6.9 1 23 334 357 334 357 0.97
10 47 1.4e-05 0.00072 20.1 1.8 1 23 363 385 363 385 0.98
11 47 0.051 2.6 8.9 4.9 1 23 391 412 391 412 0.97
12 47 0.0053 0.27 12.0 4.7 1 23 418 441 418 441 0.94
13 47 0.006 0.31 11.8 3.5 1 23 447 469 447 469 0.97
14 47 0.0053 0.27 12.0 4.7 1 23 475 498 475 498 0.94
15 47 0.0061 0.31 11.8 7.9 1 23 504 526 504 526 0.97
16 47 0.001 0.052 14.2 4.4 1 23 532 555 532 555 0.94
17 47 0.0049 0.25 12.1 8.3 1 23 561 583 561 583 0.98
18 47 0.0053 0.27 12.0 4.7 1 23 589 612 589 612 0.94
19 47 0.0061 0.31 11.8 7.9 1 23 618 640 618 640 0.97
20 47 0.001 0.052 14.2 4.4 1 23 646 669 646 669 0.94
21 47 0.00029 0.015 15.9 3.5 1 23 675 697 675 697 0.98
22 47 0.0027 0.14 12.9 3.8 3 23 705 725 703 725 0.98
23 47 0.087 4.4 8.1 8.3 1 23 731 753 731 753 0.98
24 47 0.018 0.9 10.3 5.6 1 23 759 781 759 781 0.98
25 47 0.0078 0.4 11.4 7.8 1 23 787 809 787 809 0.97
26 47 0.0042 0.21 12.3 5.4 1 23 815 837 815 837 0.97
27 47 0.0002 0.01 16.5 6.1 1 23 843 865 843 865 0.98
28 47 0.027 1.4 9.7 5.8 1 23 871 893 871 893 0.95
29 47 0.00027 0.014 16.0 5.0 1 23 899 921 899 921 0.99
30 47 0.004 0.2 12.3 3.2 3 23 929 950 927 950 0.94
31 47 0.0049 0.25 12.1 8.3 1 23 956 978 956 978 0.98
32 47 0.00051 0.026 15.2 2.5 1 23 984 1007 984 1007 0.94
33 47 0.00033 0.017 15.8 3.2 1 23 1013 1035 1013 1035 0.98
34 47 0.0017 0.087 13.5 4.2 1 23 1041 1063 1041 1063 0.97
35 47 0.013 0.67 10.7 9.2 1 23 1069 1091 1069 1091 0.98
36 47 0.018 0.9 10.3 5.6 1 23 1097 1119 1097 1119 0.98
37 47 0.0078 0.4 11.4 7.8 1 23 1125 1147 1125 1147 0.97
38 47 0.0042 0.21 12.3 5.4 1 23 1153 1175 1153 1175 0.97
39 47 0.00045 0.023 15.3 6.2 1 23 1181 1203 1181 1203 0.98
40 47 0.035 1.8 9.4 5.7 1 23 1209 1231 1209 1231 0.95
41 47 0.00027 0.014 16.0 5.0 1 23 1237 1259 1237 1259 0.99
42 47 0.004 0.2 12.3 3.2 3 23 1267 1288 1265 1288 0.94
43 47 0.0049 0.25 12.1 8.3 1 23 1294 1316 1294 1316 0.98
44 47 0.00051 0.026 15.2 2.5 1 23 1322 1345 1322 1345 0.94
45 47 0.00033 0.017 15.8 3.2 1 23 1351 1373 1351 1373 0.98
46 47 0.0017 0.087 13.5 4.2 1 23 1379 1401 1379 1401 0.97
47 47 0.0019 0.098 13.3 5.4 1 23 1407 1429 1407 1429 0.98

Sequence Information

Coding Sequence
ATGGCAGAAACCACAATATTTTgtcgaatttgtttaaaaaaaataagggacGGAAGCCTATATCATTCCCCAAGCAACGACTCCAAGTTGTCGACCATTTCTATAAAAACGgaatTGATCATTGATGAAAATCCACTTGCGTGTACCGAATGCAAGCTGAAAGAAGAACACCAAAACTTACCGGATACATTTCCGACTTCACTTGTTAGCgaagaaaatttcttaaaaacaatcaaagatGAATTTGTCGAAGTTGCAGTTAAAAATGAAACGATGATCAAAGAAGAATATGTGTTTTTTAAGGAGGATGTGCCCGTCTGCGTGGAAGAATCTGAATCGACATATAACTGCGAGCGATGTAATTATGCAACTagtgataaacaaaaattaatcgatCACGTATTTACTCACTGCTACAAATGCGATCTGTGTAATTACACCACCTTCGAACAGTCTTCGTTAGAGGAACACAAAAAGGTACACGAGGAGAAATCTTTCGGCTGCGATAAGTGCGACTATAGTTCTTacttcaaatgtaatttatCTCGACACAAGAGAATGCATATTCAagagaaaccgtttaaatgtaatttttgcgaTTATTGCAGTAGTGATTCCGGCAACTTGAAAAAGCACATGCACAAACATTCGGGCGAGAAACCTTTCggctgcgacaaatgcgactacaaaTGTAGCAGGAAAAATGAATTGTCTCGGCACAGTAGGATACACactcaagaaaaaccgtttaaatgtaatttttgtgattattgttcGAATGAATCTTGCAACCTAAGAACTcacatgtacaaacattctggGGAGAAACGTTTCAGGTGTGATAAATGCGACTACAgctgttccaaaaaaaattatttaactcaGCACAATATAATACACACGGAagagaaaccgtttaaatgcaatttttgtgattattgcagtCGTAGATTCAGCAACCTGAAATCGCACATGTACAGTCATTCTGGTGAGAAACGTTTCAGCTGCGATAAATGTGATTACAGCTGTTCGaaacaaaatgatttaactCGTCACCATAGAAGAATGCACACTCAAGAAAAACcgtataaatgtaatatttgtgattattgcagcagTGATTCTGGCAACTTAAAAAATCACATCTACATACATTCAGGGGAGAAACCTTTCAGAtgtgacaagtgcgactacagCAGCGATTGCAGCAACCTGAAAAAGCACGTGTTCAAACATACCGATGAGAAAAAATTCAGctgtgataagtgcgactatAAGTGTAGCAAGAAAAGTGATTTATCTCGACACAATTATACGATACACACTcaagaaaaactgtttcaatgtaatttttgtgattattgcggCAGTGAATCCGGCAACCTGAAAAAGCACGTGTTCAAACATACCGATGAGAAAAAATTCAGctgtgataagtgcgactatAAGTGTAGCAAGAAAAGTGATTTATCTCGACACAATTATACGATACACACTcaagaaaaactgtttcaatgtaatttttgtgattattgcagcagCGATTGCAGCAACCTGAAAAAGCACGTGTTCAAACATACCGATGAGAAAAAATTCAGctgtgataagtgcgactacagGTGTAGTAGAAAAAGTGATTTATCTCGACACAATTATACGATACACACTcaagaaaaactgtttcaatgtaatttttgtgattattgttgCAGTGAATCGCGCAATCTGAAAACTcacatgtacaaacattctggGGAGAAACCTTTCAGCTGCGATAAGTGCGACTATAAGTGTAGCAAGAAAAGTGATTTATCTCGACACAATTATACGATACACACTcaagaaaaactgtttcaatgtaatttttgtgattattgcagcagCGATTGCAGCAACCTGAAAAAGCACGTGTTCAAACATACCGATGAGAAAAAATTCAGctgtgataagtgcgactacagGTGTAGTAGAAAAAGTGATTTATCTCGACACAATTATACGATACACACACGAGAGAAACggtttaaatgtaatatttgcgATTATCGCAGCAGGTATTTCGGCAACCTGAAAAAACATATGTACAAACATTCTGGAGAGAAACCTTTCGGCTGTGATAAGTGCGACTTCAGGTGTAGTACGAAAAGCGGTTTGTCTCGGCACAAAAGGATACACACtcaagaaaaactgtttaaatgcaatttttgtgattattgctcCAATGAATCGTGCAACCTAAGAACTcacatgtacaaacattctggGGAGAAACGTTTCAGCTGCGATAAGTGCGACTACAGCTGTTCCATCAAATGTAGTCTAGCTCGACATAAGAGGATCCATACTCGagagaaaccgtttaaatgcgatttttgtgattattgcagcagCGATTGCAGCAACCTGAAAAAGCACGTGTTCAAACATACCGATGAGAAAAAGTTCAGCTGTGATAAATGTGACTACAGCtgttccaaaaaatattatttatctcgGCACAACATGATGCACACTCAAGAGAAACGgtataaatgtaatatttgtgtttattgttgCAGCGACTCCGGCAACTTGAAGAAGCACATGTACAAGCATTCTGGGGAGAAACCTTTCAGCTGCGATAAGTGCGACTACAGGTGTAGCACAAAACATGGTTTATCTCGGCACAATACGATACATACACGAGAGAAACcgttcaaatgtaatttttgtgattattgcagccGTAGGTCCGGCGACTTGAAATCGCACATGTACACACATTCTGGTGAGAAACCATTCGGttgtgataagtgcgactacagGTGTAGTAGAAAAAGTGATTTATCTCGACACAATTATACGATACACACTcaagaaaaactgtttcaatgtaatttttgtgattattgttgCAGTGAATCGCGCAATCTGAAAACTCACATGTACAAACATTCGGAGGAGAAACGTTTCCGCTGCGATAAATGCGACTACagttgttcaaacaaaaatgatttggcTCGTCACAATATAAGAATACACACTCTAGAAAAACCGTTCAAATGTAATCTTTGTGATTATTGCGGCAGTGAATCCGGCAACCTGAAAAGGCACATGTACAAACATACAGGGGAAAAACCTTTCAGctgtgataagtgcgactatAAGTGTAGCAAGAAAAGTGATTTATCTCGGCACAATATGATACACACTCAAGAAAAACCGtataaatgtagtttttgtaattattgttgcaGTGAATCGCGCAATCTGAAAACTcacatgtacaaacattctggGGAGAAACCTTTCAGCTGCGATAAATGCGACTACAGCTGTTCCATCAAATGTAGTCTAGCTCGACATAAGAGGATCCATACTCGagagaaaccgtttaaatgcgatttttgtgattattgcagcagCGATTGCAGCAACCTGAAAAAGCACGTGTTCAAACATACCGATGAGAAAAAATTCAGCTGTGATAAATGTGACTACAGCtgttccaaaaaatattatttatctcgGCACAACATGATGCATACTCAAGAGAAACGgtataaatgtaatatttgtgtttattgttgCAACGACTCCGGCAACTTGAAGAAGCACATGTACAAGCATTCTGGGGAGAAACCTTTCAGCTGCGATAAGTGCGACTACAGGTGTAGCTCGAAACATGGTTTATCTCGGCACAATACGATACATACACGAGAGAAACcgttcaaatgtaatttttgtgattattgcagccGTAGATCCGGCGACTTGAAATCGCACATGTACACACATTCTGGTGAGAAACCATTCGGttgtgataagtgcgactacagGTGTAGTAGAAAAAGTGATTTATCTCGACACAATTATACGATACACCCTcaagaaaaactgtttcaatgtaatttttgtgattattgttgCAGTGAATCGCGCAATCTGAAAACTCACATGTACAAACATTCGGAGGAGAAACGTTTCCGCTGCGATAAATGCGACTACagttgttcaaacaaaaatgatttggcTCGTCACAATATAAGAATACACACTCTAGAAAAACCGTTCAAATGTAATCTTTGTGATTATTGCGGCAGTGAATCCGGCAACCTGAAAAGGCACATGTACAAACATACGGGGGAAAAACCTTTCAGctgtgataagtgcgactatAAGTGTAGCAAGAAAAGTGATTTATCTCGGCACAATATGATACACACTCAAGAAAAACCGtataaatgtagtttttgtaattattgcagCAATGATTCGGGCAACCTGAAGAAGCACCTGTACAAACATTCTGTGCCGAAGTGA
Protein Sequence
MAETTIFCRICLKKIRDGSLYHSPSNDSKLSTISIKTELIIDENPLACTECKLKEEHQNLPDTFPTSLVSEENFLKTIKDEFVEVAVKNETMIKEEYVFFKEDVPVCVEESESTYNCERCNYATSDKQKLIDHVFTHCYKCDLCNYTTFEQSSLEEHKKVHEEKSFGCDKCDYSSYFKCNLSRHKRMHIQEKPFKCNFCDYCSSDSGNLKKHMHKHSGEKPFGCDKCDYKCSRKNELSRHSRIHTQEKPFKCNFCDYCSNESCNLRTHMYKHSGEKRFRCDKCDYSCSKKNYLTQHNIIHTEEKPFKCNFCDYCSRRFSNLKSHMYSHSGEKRFSCDKCDYSCSKQNDLTRHHRRMHTQEKPYKCNICDYCSSDSGNLKNHIYIHSGEKPFRCDKCDYSSDCSNLKKHVFKHTDEKKFSCDKCDYKCSKKSDLSRHNYTIHTQEKLFQCNFCDYCGSESGNLKKHVFKHTDEKKFSCDKCDYKCSKKSDLSRHNYTIHTQEKLFQCNFCDYCSSDCSNLKKHVFKHTDEKKFSCDKCDYRCSRKSDLSRHNYTIHTQEKLFQCNFCDYCCSESRNLKTHMYKHSGEKPFSCDKCDYKCSKKSDLSRHNYTIHTQEKLFQCNFCDYCSSDCSNLKKHVFKHTDEKKFSCDKCDYRCSRKSDLSRHNYTIHTREKRFKCNICDYRSRYFGNLKKHMYKHSGEKPFGCDKCDFRCSTKSGLSRHKRIHTQEKLFKCNFCDYCSNESCNLRTHMYKHSGEKRFSCDKCDYSCSIKCSLARHKRIHTREKPFKCDFCDYCSSDCSNLKKHVFKHTDEKKFSCDKCDYSCSKKYYLSRHNMMHTQEKRYKCNICVYCCSDSGNLKKHMYKHSGEKPFSCDKCDYRCSTKHGLSRHNTIHTREKPFKCNFCDYCSRRSGDLKSHMYTHSGEKPFGCDKCDYRCSRKSDLSRHNYTIHTQEKLFQCNFCDYCCSESRNLKTHMYKHSEEKRFRCDKCDYSCSNKNDLARHNIRIHTLEKPFKCNLCDYCGSESGNLKRHMYKHTGEKPFSCDKCDYKCSKKSDLSRHNMIHTQEKPYKCSFCNYCCSESRNLKTHMYKHSGEKPFSCDKCDYSCSIKCSLARHKRIHTREKPFKCDFCDYCSSDCSNLKKHVFKHTDEKKFSCDKCDYSCSKKYYLSRHNMMHTQEKRYKCNICVYCCNDSGNLKKHMYKHSGEKPFSCDKCDYRCSSKHGLSRHNTIHTREKPFKCNFCDYCSRRSGDLKSHMYTHSGEKPFGCDKCDYRCSRKSDLSRHNYTIHPQEKLFQCNFCDYCCSESRNLKTHMYKHSEEKRFRCDKCDYSCSNKNDLARHNIRIHTLEKPFKCNLCDYCGSESGNLKRHMYKHTGEKPFSCDKCDYKCSKKSDLSRHNMIHTQEKPYKCSFCNYCSNDSGNLKKHLYKHSVPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-