Ater008199.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Abscondita terminalis
Gene Symbol
-
Assembly
GCA_013368085.1
Location
JABVZW010001659.1:305978-313166[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 3.6e-07 1.8e-05 25.1 1.3 1 23 215 237 215 237 0.98
2 23 8.9e-06 0.00045 20.7 7.4 1 23 243 265 243 265 0.98
3 23 1.4e-05 0.00069 20.1 0.5 1 23 271 293 271 293 0.99
4 23 0.00028 0.014 16.0 1.7 1 23 299 321 299 321 0.96
5 23 0.00078 0.04 14.6 1.3 1 23 327 349 327 349 0.97
6 23 4.3e-07 2.2e-05 24.8 3.8 2 23 356 377 355 377 0.97
7 23 3.9e-07 2e-05 25.0 1.9 1 23 382 404 382 404 0.98
8 23 7.3e-06 0.00037 21.0 2.3 1 23 410 432 410 432 0.99
9 23 1.9e-05 0.00096 19.7 1.3 1 23 437 459 437 459 0.96
10 23 2e-06 0.0001 22.7 1.9 1 23 465 487 465 487 0.98
11 23 1.6e-07 8.1e-06 26.2 1.4 1 23 493 515 493 515 0.97
12 23 1.4e-07 7.3e-06 26.3 1.3 1 23 802 824 802 824 0.99
13 23 2.5e-05 0.0013 19.3 7.1 1 23 830 852 830 852 0.98
14 23 1.1e-05 0.00054 20.4 0.8 1 23 858 880 858 880 0.99
15 23 0.093 4.8 8.0 3.2 1 23 886 908 886 908 0.95
16 23 0.0011 0.058 14.1 0.5 1 23 914 936 914 936 0.97
17 23 2.9e-08 1.5e-06 28.5 3.5 1 23 942 964 942 964 0.99
18 23 9.8e-06 0.0005 20.6 2.1 2 23 970 991 969 991 0.97
19 23 3.7e-06 0.00019 21.9 2.8 1 23 997 1019 997 1019 0.99
20 23 7.7e-06 0.00039 20.9 0.7 1 23 1024 1046 1024 1046 0.97
21 23 5.2e-06 0.00027 21.4 4.0 2 23 1053 1074 1052 1074 0.98
22 23 1.2e-07 6.2e-06 26.5 1.8 1 23 1080 1102 1080 1102 0.99
23 23 2.6e-05 0.0013 19.2 3.3 1 23 1108 1130 1108 1130 0.97

Sequence Information

Coding Sequence
atgaacaatGTATTCCATTACACGGACTGCTGTCGAGCTTGCCTAAAAATCGAAGGAACTTTAACATTAACTTCAACAATAGACACtgatacaataaaattaagtgATAAACTGTTGTCTTGTGTATCGGAAGTCGCTTGGTTAAAAGAAGCTTTACCTTCTTTTATATGTTCAACTTGTGTTGACAAGCTAAGGATTGCTTATGACTTTCGAATATTGTGTCTACAATCGGATACTACTCTACAGCAATATATGCATCAGCATAAAACCATAAATGGCGATATATATACTGCTGTTCCGGAGTTTATGATGCCAGAAACCGGGCCCGATATCACAACAAAACATATACATAATCACAACTCAGCTTccgaatatttaaatatcaaacacTTTTTGGACAGCGAAGATTTGTCTCGATCCTCAAACCCTGCTGACTTAGATACGTCTAGGAGTGCAACACCTGACTCAGTTGCCACAACAGGTTTTGCAAAACTAGATAAGGCACCcaagaaaattgttaataccAGATCTGTGAAAACACAAACTCAACCACTGCCACAATATCCAACATTAACACCAGCAGCAGCTCGCCTTGAAGCACAAACAAccaaaactactatttttataGAAGATCCCTATAAACACGTATGTAATGTCTGTGGAAAAAAGTATGCAAAAAatgctaatttaaaaatacacatgAGAACACACACTGGAGAGAAACCTTTTGAATGTAAATATTGtgagaaaaagttttatcattCTTCACATTTAAGAGAGCATATACGAAGACATACCGGTGAGAAACCATTCCAATGTACAGTGTGCTCTAAAAGGTTTACAATTACTGCAGAATTAACTGTTCATATGCGAATACATACTGGAGAGAAACCTTATGCTTGTAATTGTTGTGAAAAGCGTTATATTAAGGCCTCAGATTTGCAAGTTCACATGCGGACTCACACAGGTGAAAAACCATTCGCTTGTTCATATTGTGATAAGAAGTTTACTAGTGGGTATATATTAAATTCACATTTAAAGACACATACAGGAGACAGACCATGGTCTTGCACTATGTGCAATAAGTCATTTACTCAAAGTTCACATTTAACTGTTCATATGAAGAAGCACACTGGAGAAAAGTTTTCGTGCAAAGTCTGTGGACAAGAGTTTACCCATTCATCTCAACTAACGGTTCATATGCGTGAGCACACAGGGAAACAGCCCTATAAGTGCACAGTGTGCGACAAAATCTGTAATTACGCTTCTGAACTGCAAACGCATATGATGAAACACACGGGGGAAAAATTTACTTGTATTACatgtgataaaaaatttacaacttcTGCATACTTACAAGAACATATACGTACTCATACaggagaaaatttatttaattgtaatttgtgtGAAAGAACTTTTACCCGCGCCACGTacttagaaaaacatttaagaacGCACACAGGGGAAAAGCCTTTTGCTTGTGAAATCTGTAGTAAAAAATTCACTCAATCATCTTCATTAACTGTTCATATGAGGAAACATACAGACCAATTAGTTTTTCACGAAAGAAATAGTCCTCATGGACTCGCAATGGATAATATTTTTCACGTTGCAGATTGCTGTCGTGCCTGTTTACGAATTGAATGTTCTTTGACTCCTACAACAACTCCTGATAAtgattctattaaattttgtgaCAAGCTGATTGCTTGTGTATCTGAAGTAatGTGGATGAAAGAGGGGCTTCCATCGTTAATATGTACAACATGTATAGAAAGGCTACGAGTGGCATACGACTTTCGAAGCGTATGCTTGCAATCGGATAACACGTTGCACAGGTACATAAGTCATCTTCAAGATGAAGCCAAACAAACTATTAACGGTCAACGTCCACTTACAACGCCAACAAAGTTCGATTTTGGCATACCCAACAGCACAAACGATAATTTACCGTGCATAATAGAAGAACCTCAAAACGCTGAATATTTAcatctgaaacattttttagataacGATGAGGAGCTTACAAAATCGGAAAATATCGTAGACACGACTTCGCGTAGTACTAGCCCCGAATGTAATACAGTTACTGTTAATTTCGTCGACAACAATCATCAGCCGTTGCAGGATGCTGCGCATCTTCAACAGTCTCAATCCGAACAACAGATACATCACCATCACCATCCGCACCAGCACCAGGAGCAAGATGAAACTTACGATAGGTTAGATAGGTCCCTAATGCAAATACAAGAAGAACAGcagcaacaacaacagcaacaatTGGAAGAGCAACATTTAACCCAATTTAAACCTCCTAGGCAAGTTATAAAACGTACTACGGGTATTCAAGTACGACCACCAACTCCTTCTACGTTACAAGAAGGGAGTGAGGTAAAGCCTTTCACGTGTACAGTATGCGGAAAGAATTATAGGAAGAATGCTAATTTACGGATACACATGAGAACGCATACGGGAGAAAAACCATTCGAGTGCCGGTATTGcgaaaaaagattttatcaTTCTTCTCATTTGCGCGAGCACATTCGCAGACACACGGGAGAGAAACCTTTTCAGTGCGCTGTATGCAATAAACGTTTTACGATTAAGGGCGAATTAACTATGCATATGAAATCACACACGGGCGAAAAACCATACGCGTGTACTTGTTGCGATCGTCGTTGTTTGACCGCCGCGGACCTTAAAGTACATATGAGGACTCACACTGGAGAAAAACCGTTCGCGTGTGTAACTTGCGGGAAAAAATTTGCCAGTACCTATATATTAAATTCTCACATTAAAACTCACACGGGTGAAAGACCATATTCTTGTTCAGTATGCGATAAAACTTTTACTCAATCGTCACACTTAAACGTACATATGCGTAAACATACCGGAGAAAAAGTCAGTTGTAAAATTTGTGACTCAAAATTTACTCATTCGTCCCAATTGACTGTTCATATGCGTGAACATACTGGGAAACAACCTTATAAGTGCACCATGTGCGATAAAGTGTGTAATTACGCGTCCGAGTTACAAACTCATATGATGAAACACACGGGGGAAAAATTTGCTTGCGTTACTTGTGATAAAAAGTTTACTACGGCAGCTTACTTGCAAGAACACACCCGCACGCATACAGGTGAGAATCTTTCCACGTGTAGCATATGTGATCGACAGTTTACTAGACATCAGTATTTGGAGAAGCACATGCGAACTCATACCGGAGAAAAACCGTACACGTGCTTCACGTGCGGGAAAAAATTTACTCAATCATCCTCGTTGAAAGTTCATATACGAATACATACCGGTGAAAAACCATATCACTGTCAGATATGCGATAGAAGATTCACGACGTCTTCAGATTTATCTGCGCATAATAAGAAACACAAGAAgtacattaatttgtaa
Protein Sequence
MNNVFHYTDCCRACLKIEGTLTLTSTIDTDTIKLSDKLLSCVSEVAWLKEALPSFICSTCVDKLRIAYDFRILCLQSDTTLQQYMHQHKTINGDIYTAVPEFMMPETGPDITTKHIHNHNSASEYLNIKHFLDSEDLSRSSNPADLDTSRSATPDSVATTGFAKLDKAPKKIVNTRSVKTQTQPLPQYPTLTPAAARLEAQTTKTTIFIEDPYKHVCNVCGKKYAKNANLKIHMRTHTGEKPFECKYCEKKFYHSSHLREHIRRHTGEKPFQCTVCSKRFTITAELTVHMRIHTGEKPYACNCCEKRYIKASDLQVHMRTHTGEKPFACSYCDKKFTSGYILNSHLKTHTGDRPWSCTMCNKSFTQSSHLTVHMKKHTGEKFSCKVCGQEFTHSSQLTVHMREHTGKQPYKCTVCDKICNYASELQTHMMKHTGEKFTCITCDKKFTTSAYLQEHIRTHTGENLFNCNLCERTFTRATYLEKHLRTHTGEKPFACEICSKKFTQSSSLTVHMRKHTDQLVFHERNSPHGLAMDNIFHVADCCRACLRIECSLTPTTTPDNDSIKFCDKLIACVSEVMWMKEGLPSLICTTCIERLRVAYDFRSVCLQSDNTLHRYISHLQDEAKQTINGQRPLTTPTKFDFGIPNSTNDNLPCIIEEPQNAEYLHLKHFLDNDEELTKSENIVDTTSRSTSPECNTVTVNFVDNNHQPLQDAAHLQQSQSEQQIHHHHHPHQHQEQDETYDRLDRSLMQIQEEQQQQQQQQLEEQHLTQFKPPRQVIKRTTGIQVRPPTPSTLQEGSEVKPFTCTVCGKNYRKNANLRIHMRTHTGEKPFECRYCEKRFYHSSHLREHIRRHTGEKPFQCAVCNKRFTIKGELTMHMKSHTGEKPYACTCCDRRCLTAADLKVHMRTHTGEKPFACVTCGKKFASTYILNSHIKTHTGERPYSCSVCDKTFTQSSHLNVHMRKHTGEKVSCKICDSKFTHSSQLTVHMREHTGKQPYKCTMCDKVCNYASELQTHMMKHTGEKFACVTCDKKFTTAAYLQEHTRTHTGENLSTCSICDRQFTRHQYLEKHMRTHTGEKPYTCFTCGKKFTQSSSLKVHIRIHTGEKPYHCQICDRRFTTSSDLSAHNKKHKKYINL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-