Basic Information

Gene Symbol
Sema1a_1
Assembly
GCA_013368085.1
Location
JABVZW010002851.1:3352-105689[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 5.5 6.6e+03 -2.5 1.8 6 18 1113 1125 1112 1129 0.86
2 3 0.0002 0.24 11.7 0.0 1 31 1250 1284 1250 1287 0.86
3 3 3.4e-13 4.1e-10 39.8 0.1 3 44 1356 1401 1354 1403 0.91

Sequence Information

Coding Sequence
ATGGATTCAATACCCGTCAAAACTTTACCATACATAATCCTCATTACCATATGTAATCCTCTTGGTATAAgaGCGGAAGATGACATGAATCACTTCATGGGAAATGATACGCACACAGACTATTTTCGATTGGTGTTACGGGATGGAGAATCCCTTTTGGTAGGCGGAAGGAATATTGTCTATAACCTCACCGTCTCAGATTTGAGAGAACAACAACGATTATCGTGGTATTCGAGTGAGCCGGACGTAAAAATGTGCGTCATGAAAGGAAAAGACGAGGAAAACTGTCAAAATTATGTTCGAATTATGGCGAAAACGGCAGCAGGAGGATTGTTGGTGTGTGGAACAAATTCATTTAAGCCACTTTGTAGAGATTATATCATCCATAATGGAAATTACACAGTGGCAAAAGAGAAACCAGGCCAAGCTGTATGTCCGTACGACCCTCATCATAACTCGACTGCTATATATGTCGATGGAGATTTGTACACTGGCACGGTGGCCGATTTTAGCGGAATGGATCCTATTATCTACAGAGAACCGCTACAGACTGAACAATACGATTCGATGAGTCTCAATGCTCCAGATTTTGTCAGTTCCATGACGCACGGAGATTTCGTCTACTTCTTCTTCAGAGAAACCGCAGTCGAATATATTAACTGCGGAaagtcCGTTTATTCCCGCGTGGCTCGTGTTTGCAAGTATGACCGTGGAGGACCACATCGGTTCCGGAATAGATGGACTTCCTTCCTTAAATCTAGGCTTAACTGCTCCGTCACGGGAGAATTTCCTTTTTACTTTAACGAAATACAATCGACGACGGAATTAATTGACGGGCAGTATGGTGACATATCTGCTCAATTAGTTTACGGAACATTTACCACTCCACCAAACAGCATTTCGGGAAGCGCCGTGTGTGCGTTCTCTCTTCAAGATATTGCAGATACTTTCGAAGGAAATTTCAAAGAACAATCTGCTCTCAATTCAAATTGGTTACCTGTACAAAGTTCGAAAGTGCCAGATCCTAGACCGGGACAATGTCATAACGACAGCCGCACATTGCCCGATTTAACGCTTAACTTTATTAAGACGCATTCTCTTATGGACGAGAGCGTTCCTTCATTCTTCGGACAACCTATTGTAATTAGAACTAGTTTTCATTATCGTTTTACGCAAATTGCTGTTGATCCACAAGTCAAAGTACCTGGTGGAAGAACGTACGATGTTCTTTTTATAGGAACTGATAATGGAAAAGTTATAAAGGCTGTTAATGCGTTGTCGTCGGAGACCAGGCATGGCGTGCGCCCTGTTGTTGTTGAAGAAATTCAAGTATTCCCTGTTCACGTTGCTGTTAGGGGATTGCATGTTATGCATTCGCAAAAGCAAGAAGGTCGCCTTATTGTTGTTTCCGACGGAGAAGTTCAATCTCTACGACTTCACAGATGTGATAGTAACAAAATATCAAGTTGCAgTGAATGTGTTGCTTTACAAGACCCATATTGTGCTTGGGATAAGGTTCAAGGTAAATGTCGTTCTCACGGTTCCGGCCGATGGGGCGAAGAAAGTTATTTCTATCAAAGTGTCACGACTGGACAGCATTCAGCTTGTCCACCACCGAAATTGGGCAAAGACGCCAGTTCTGCTGGTGGTTTAAGCTCGATACAACCGAAATTTAATCATGATCACCAACCTAGTAAAGATATGCCCGATGGGCAGGTGATAAATATAATGCAAGATCgtggttttgaaaatgttggaGGTGATCCATCAGTAACAGCAGCTGATAATTCATCGTCGCAATATTCCGCTGAAGTTTTAATTATGGCCGTAGTGGCGGGTGCCGTAACTGCCTTAGTTGTAGGATTCATAGCCGGTTATTTGTGTGGTAGAAAATGTCACAAAGACGATGACGATAATTTACCGTATCCCGATACCGAATACGAATATTTTGAACAACGTCAAAATATGAATAGCTTTTCTAATTTCAGTCGTATACAAGCGGAACCAAAGTTACTACCACAAGAAGAGGTTACGTATGCAGAACCAGTACTTGTTCCTCAACCGCCTCCAAAATTACATTCACCAAAGAACACGTTGCGAAAAGGTCCCCATCAAAATAACGCAGAAACCCTCTTCCAATTTCAACCCGACACCGGCTACAACGGTCGAGATAATTACCGTGGTAGAGATAATTTTGGCACCTTGAGATCTCATCAGGGTGACAACTACAGACGGGGTGATGGATTTTCGACGACCAGAAaaaTGCCAACAGTATTGTTGCTGGACGTCTCCTTGTCAATGACTAGGCCGATTCATGTATCGGATACTGTCGAAATATCTAGGAAATATTTAGCAATTCAAGGGATCAACGCGTTTTTAGATTGTCTAAGTATTCACTCGCGTTTAGAATTTATCGCTTTGGAATCTAAATATTATGCTTTTTTGACAATGGGAATTAACGTCGAACAAAATAACCTCTGCAACGCTGTCGCTGTACGTTATCGTTTTGTATATAATCTAATTGAAAATGTTCCACAACTCTTATTTCTTCCTCACGAAGTGCGCGAATGTGAGGtggagaaaaaagaagaaattgattcCAGTGATGAGCAAAACAATGATGTTATTTATGAAGACAACGTCGAGTATTTAAGAAGTTTAGATCCGAAAGAATGGAAGAAGCAAGATCATTACAGAGTATTAGGTATAAAGAATCTTCGTTTCGATGCTTCCGAAGATGTGATTAAAACTGCTTATAGAAAAATGGTACTTAAACATCATCCTGACAAACGTAAAGCTTTAGGAGAGGAAATAAGACCTGACGATGATTATTTTACTTGTATTACGATGGCGTACGAAACTTTGGGAACTTTAATGAGACGAAGGGCGTACGATTCTGTAGATCCAGATTTTGACGATACATTACCTACCGGTTCTGAATTAaagcaagatttttttaaagtttttcaatattattttgatttaaatgctCGTTGGTCTGAAAAACAACCGGTTCCTAAATTAGGAGGGCTTGAATGCACACGAGAACGTGTCgacaaattttattcgttttggTATAACTTCAAGTCTTGGAGGGAATATTCTTATGAAGATGAAGAAGATAAAGATAAATGTCAGGATAGGGATGAACGTAGAAtgtgtgaaaaaataaatagggCCGAGCGTCagcgaaaaaagaaagaagaaatgtcGAGAATTAGAAATTTAGTTGATTTGGCATATAATGCTGATCCAAGAATTGCGAAATTTAAACAAGAAGATAAGGATCGAAAGCTGGCTGCTAAGAGAGCTAAGCAGACGGCAGCGCAAgccaaaaaagaagaggaagagaGATTGTTGCGAGAGGTGGAGCAGGCGAAGGAGAAAGCTGAAGCGGCTGAACGTGCGAAATTAGAAGTGAAACGTCAAGAACGTGAATTGCAAAAGAAggcttttaaaaaagaaaggaagacgTTTAGGGATGCTtgcaaaagtaataattattatgcaaataatGAAGATGAACGTTTGTTGCACATGCAAGCTGTtgataaaatttgtgaaatgcTTACCTTAAACGAATTAGAAGAATTGAATAAGAAGCTGCAGAATAATGGGCattctacttttattaaaataaaaaatgagtgcGAAGAACGTGCGGAGATGGAACGAAAGGCTTCGTTAGAAACGATGGCTCAGAAGACTAACGACGCAGTTAAGAATTTGAAGAATGGGTTGAAGCTAAAACCAGAGTGGTCTCAAGAGAACCTACAGTTATTAATTAAAGCTGTAAATTTATTCCCAGCAGGTACCAATCAAAGATGGGACGTGGTCGCAAATTTCATTAACCAACACGGCATCTTCAAAGACAACGCCCTTAAATATAGTGCTAAGGAGGTACTTGCCAAGGCTAAAGATTTACAGAATACGGATTTCTCAAAAAGTGATCTTAAAGAAGCGGCTAATAAACAAGCGTTTATGAACTTCGAGAAAGAAAAACGTAGTATAGCAGTCGTTAATGAATCCGAAATTAGTAAAAAGGTCGTCGAAAATGGGAATCAAGTCTGGACGGCAACGGAACAGCAACTTTTGGAGCAAGCTTTAAAAACCTATCCTGCATCGACAACGGATCGTTGGGACAGAATTGCAGAATGCATACCGAATCGTACGAAAAAAGATTGCATGAAAAGATACAAAGAATTGGTCGAAATTATAAAGGCGAAAAAAGCTGCTCAAGCTGGCAATTGTCTATTTGAATATTCGGACGCATCTTCTATATCGCATCGCTCATTTCGTCTTTTCAACATAACGGGTTTATACCGAATCAACGAAGCGGGCGTAGTTTGGACGATGTGTTCAAATATAGAAGTGGCCGACGAGACCAGGAGTGTGAGAACTCAGGAGAAAGTTCACGATTGTACAAGATGCGACTGTCGACTATATTACCCCAAAGCGGGTAAACCATCtatgactatttttttatttatctgcGGCAAAACTGAAGCTGTAattgcaTTTTCGTCTCTCTACGAAGAAAGATGCGCGTTTACACGAGACTATAACGCAATTAAAACTGAACTCCATAAATTGGAGGACTATGATAAAACTGGAATAGAATCGGCGTTGCACGGCGCCAGTCAATTAGTATTAGGCGAATGGGGCAACAACATTCCATGCcagGTCGTTTTAATAACGGACGGGAATACCGGAATAGGACCGATGTCACTTACCGAATCATTTTCCACATTGAATCATCGGAACGGCTCGAATCCTTTTCCGCTTCCGTTTGCGTTTCCTGCAAAACTACATGTAGTTTGCATTGCTCCGAATGACGATCCAAACTTGGTTAAATCAAAACCTTTGTATCAACGACTAGTGGATATGACTGGTTATGACGGATCGGTGTTGACTCCGGAAGGGGGCTTAGGCGAATCTAACGTCGTGACTATGTTTCAAAAACTAGCCGAAGATATGTACACATCCTTTAGGGGAATTTTAAAGTGCGGGAACTTAGAGTCGCGGATTACATTATCACCAGCCCCCATTCCTTACACCAAAGTAACCGATTTTGATTGCCAAACTTACGCGTTGTCCGATTTAATAGAAGTTTGTGGATTTATACCGATATCGGATGTCGGTTCGCCGATGGCAATTAGCCGACATTTAATCTTACCAACTAGTAACCTTGGTAAAGAAAACGTTCCTGTTACTACCGAAATTGATCTTACCGATGATGACACTGCTGAAGAAGGAAAGGTTCCTTCTTTTTGTGTACTATTGCACGGAGCTCTCAAAGTTGAAAACATGGCCGCGCTGGTTACCTTAAGGGAAAATTGGTTTGGATTTATATATTCGTGGGCCGATtcgaagaaaaaatcaaatcttaTGTTAACGGTTTTAACACCAGGATCTGACGCCGTTCCTTGGTTGGGCGATTTAAATCATTTGGAATCTGCCGATAATTTGATGCCCGAACAAATAGGTAGTTTTCCGGTTAGGCCGTCGGAAAAACGCAGTTATTCACAAAACGGAGTCGTTTGGATCAGACAATCTGGTCTTCAATCcgatatacaaaaaattttgaggcACGCGCGTAAATTACCCGAAAAAACGCAACAGTTCTACAAGGAGTTGAACCGTTTAAGAAAAGCTGCCATTTCTTTGGGATTTTTGGATTTACTAAATGGTTTAGCTTACATATTTGAACAAGAGTGTACACAATTACCTGGGAGTGCTCATCCTGATTGTGCGCTGCAACTCACGCACGCGGCTGATGTGcttagaaaaacacaaaaaaaagacataaaatatGTGATATTGCCCTTAAATACTAATTACAACAGTTCTTAA
Protein Sequence
MDSIPVKTLPYIILITICNPLGIRAEDDMNHFMGNDTHTDYFRLVLRDGESLLVGGRNIVYNLTVSDLREQQRLSWYSSEPDVKMCVMKGKDEENCQNYVRIMAKTAAGGLLVCGTNSFKPLCRDYIIHNGNYTVAKEKPGQAVCPYDPHHNSTAIYVDGDLYTGTVADFSGMDPIIYREPLQTEQYDSMSLNAPDFVSSMTHGDFVYFFFRETAVEYINCGKSVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVTGEFPFYFNEIQSTTELIDGQYGDISAQLVYGTFTTPPNSISGSAVCAFSLQDIADTFEGNFKEQSALNSNWLPVQSSKVPDPRPGQCHNDSRTLPDLTLNFIKTHSLMDESVPSFFGQPIVIRTSFHYRFTQIAVDPQVKVPGGRTYDVLFIGTDNGKVIKAVNALSSETRHGVRPVVVEEIQVFPVHVAVRGLHVMHSQKQEGRLIVVSDGEVQSLRLHRCDSNKISSCSECVALQDPYCAWDKVQGKCRSHGSGRWGEESYFYQSVTTGQHSACPPPKLGKDASSAGGLSSIQPKFNHDHQPSKDMPDGQVINIMQDRGFENVGGDPSVTAADNSSSQYSAEVLIMAVVAGAVTALVVGFIAGYLCGRKCHKDDDDNLPYPDTEYEYFEQRQNMNSFSNFSRIQAEPKLLPQEEVTYAEPVLVPQPPPKLHSPKNTLRKGPHQNNAETLFQFQPDTGYNGRDNYRGRDNFGTLRSHQGDNYRRGDGFSTTRKMPTVLLLDVSLSMTRPIHVSDTVEISRKYLAIQGINAFLDCLSIHSRLEFIALESKYYAFLTMGINVEQNNLCNAVAVRYRFVYNLIENVPQLLFLPHEVRECEVEKKEEIDSSDEQNNDVIYEDNVEYLRSLDPKEWKKQDHYRVLGIKNLRFDASEDVIKTAYRKMVLKHHPDKRKALGEEIRPDDDYFTCITMAYETLGTLMRRRAYDSVDPDFDDTLPTGSELKQDFFKVFQYYFDLNARWSEKQPVPKLGGLECTRERVDKFYSFWYNFKSWREYSYEDEEDKDKCQDRDERRMCEKINRAERQRKKKEEMSRIRNLVDLAYNADPRIAKFKQEDKDRKLAAKRAKQTAAQAKKEEEERLLREVEQAKEKAEAAERAKLEVKRQERELQKKAFKKERKTFRDACKSNNYYANNEDERLLHMQAVDKICEMLTLNELEELNKKLQNNGHSTFIKIKNECEERAEMERKASLETMAQKTNDAVKNLKNGLKLKPEWSQENLQLLIKAVNLFPAGTNQRWDVVANFINQHGIFKDNALKYSAKEVLAKAKDLQNTDFSKSDLKEAANKQAFMNFEKEKRSIAVVNESEISKKVVENGNQVWTATEQQLLEQALKTYPASTTDRWDRIAECIPNRTKKDCMKRYKELVEIIKAKKAAQAGNCLFEYSDASSISHRSFRLFNITGLYRINEAGVVWTMCSNIEVADETRSVRTQEKVHDCTRCDCRLYYPKAGKPSMTIFLFICGKTEAVIAFSSLYEERCAFTRDYNAIKTELHKLEDYDKTGIESALHGASQLVLGEWGNNIPCQVVLITDGNTGIGPMSLTESFSTLNHRNGSNPFPLPFAFPAKLHVVCIAPNDDPNLVKSKPLYQRLVDMTGYDGSVLTPEGGLGESNVVTMFQKLAEDMYTSFRGILKCGNLESRITLSPAPIPYTKVTDFDCQTYALSDLIEVCGFIPISDVGSPMAISRHLILPTSNLGKENVPVTTEIDLTDDDTAEEGKVPSFCVLLHGALKVENMAALVTLRENWFGFIYSWADSKKKSNLMLTVLTPGSDAVPWLGDLNHLESADNLMPEQIGSFPVRPSEKRSYSQNGVVWIRQSGLQSDIQKILRHARKLPEKTQQFYKELNRLRKAAISLGFLDLLNGLAYIFEQECTQLPGSAHPDCALQLTHAADVLRKTQKKDIKYVILPLNTNYNSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-