Ater019586.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- bab1_1
- Assembly
- GCA_013368085.1
- Location
- JABVZW010003061.1:1924082-1947745[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-05 0.13 12.2 0.0 2 38 95 130 94 131 0.94 2 4 2.5e-11 8.6e-08 32.0 0.0 1 35 159 194 159 199 0.92 3 4 7.9e-18 2.7e-14 52.8 0.0 1 43 297 340 297 342 0.95 4 4 1.6 5.5e+03 -2.6 1.5 6 15 427 436 425 439 0.88
Sequence Information
- Coding Sequence
- atggtaattACACGGTTATCCGGTGTATTGGTCGTGGTGCGTAATGAACTTTTTCGGAAAGTGCGTCCGATTCTTTCTCTTAACTCTGGTGGTTTCGTAAATTACGATCTTTACTACTATTATGCGCTACGAAGTCGCATACCACGCGAGgcCAAGTTGTTAGAATCGTCTCACGCTTGGCTCGGCGCCTCTACTTCATCAATAGCCGAcgtctgtaataaaaaaaatgctaaatttCCAATAATCGAATGCAATTCCGGTAGGAAATCGCCAAGATGGACTTCGACCGAAATGCAACGTGCCATCGAGTTGGTACGTTCGGGCGTGCCTATAAAATCATCGGCACAACAATGTAACGTTCCCGTAATGACCCTTTGGCGGCGAACGCGCGCTTTAGGAATTATTAGCAGTCGCGCTATGACTTGCACACGGAATTTCTATAAAGcCTTATTAAAGCTTAAAACGCCGACGTGGACGcaagaacaattaaaagaagCTATCGACGCTGTTGTAAAACAGAAAATGCGCTTTACTCAAGCATCGTCGCGATACGGTATACCGAAAGGAACTTTGTACgataatattttaggaaaatcTAAACGCATGGCCGTGTTAGAGGAAGCAGGTTTGACGCCGCGCGAGGAAGAAGCCGTATTAGAATTTTGTTGCGACGTTTCCGTATCGCCTTATAATAGACGTACGAAAAAATCGCTACCGTCGATATTAAGTTTTGTCGAAAAAATAAGACGCATACGCGATCCCGAATTTATGTTCACCGCAGATAGTTACCAATATCAACTGCAATCGATGTGGCAAAAATGTTGGAGTACCAATCAAAGTCTGGTCCATAATCTGCGATTCCGCGAAAGAGGTCCGTTGAAGTCGTGGAGACCGGAAACGATGGCCGAAGCAATTTTTTCCGTGCTGAAAGAAGGTTTGTCGTTGTCGCAAGCTGCGAGAAAGTACGACATTCCTTATCCGACTTTTGTACTTTACGCCAATCGAGTACACAACATGTTAGGACCTTCGGCGGATGGTGGTTCAGATTTGCGACCGAAAGGAAGAGGACGGCCTCAAAGAATTCTTTTAGGCGTTTGGCCCGACGAGCATATCAAGGGCGTCATTCGCGCTGTCGTCTTTAGAGATTCCCATCATATTAAAGAGGAGCCGGTCTTAACGTATCAAAGGATGCACGACGGTGTCGGTTTGCCTCCGAATTATCCCAACAGTTCTTGCAGTAACGGTTCTGAATCAACGGTATCGCCGGGTGCGGCTGCTGCGGCGGCCGTCGCGGCGGTCGCCCAAGGTTTAAGGCAACAAATGTGCAACATGATGGCCGCGGCTCAACAACAAAATTCGACGCATGACGCGAACCTTGTAAATTCGTTAACTTTAGGAGGACATTGTGGACCTACGACCGTACCAAGTAACGGTACCGCTCCAATGAGTATGAGCATGAGTAATATAGCCGCAATGCGGTTAGGTAGCCCTGCCGGTAGCGTACAAGATTTGAGGATAAGTCCCGCCGGGTCCGGTTTAGAAAGTCCTTTGTCGTCGCCTTTGGGGCTGACGATGACGAACGCGATGGAAACGACGGCGCTTAATTTAGGAATGGGTAATAACGTCGACGTCGCCAGTATTGGCGTCTCCGGCATGACTTACAAACCGGCACGACCGTTTACCTCGCCCAGGGCGGAAAATCTCTTCCAAGAGGACATTGACGACTTGGTGAAACCCATGCACACGTCCACTCCTCGGTCAAAAGACACAATGGCTTCCATTAAAATGGAACCACTAACAGAGTGTCGTGGTGAATGA
- Protein Sequence
- MVITRLSGVLVVVRNELFRKVRPILSLNSGGFVNYDLYYYYALRSRIPREAKLLESSHAWLGASTSSIADVCNKKNAKFPIIECNSGRKSPRWTSTEMQRAIELVRSGVPIKSSAQQCNVPVMTLWRRTRALGIISSRAMTCTRNFYKALLKLKTPTWTQEQLKEAIDAVVKQKMRFTQASSRYGIPKGTLYDNILGKSKRMAVLEEAGLTPREEEAVLEFCCDVSVSPYNRRTKKSLPSILSFVEKIRRIRDPEFMFTADSYQYQLQSMWQKCWSTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGVWPDEHIKGVIRAVVFRDSHHIKEEPVLTYQRMHDGVGLPPNYPNSSCSNGSESTVSPGAAAAAAVAAVAQGLRQQMCNMMAAAQQQNSTHDANLVNSLTLGGHCGPTTVPSNGTAPMSMSMSNIAAMRLGSPAGSVQDLRISPAGSGLESPLSSPLGLTMTNAMETTALNLGMGNNVDVASIGVSGMTYKPARPFTSPRAENLFQEDIDDLVKPMHTSTPRSKDTMASIKMEPLTECRGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -