Ater020092.1
Basic Information
- Insect
- Abscondita terminalis
- Gene Symbol
- bab2
- Assembly
- GCA_013368085.1
- Location
- JABVZW010003138.1:613528-639416[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-12 3.8e-09 36.3 0.0 1 39 367 406 367 410 0.90 2 4 9.8e-14 3.3e-10 39.7 0.1 1 39 421 459 421 463 0.95 3 4 5.4e-18 1.8e-14 53.3 0.0 1 45 476 521 476 521 0.97 4 4 0.013 46 4.0 0.1 1 13 528 540 528 540 0.92
Sequence Information
- Coding Sequence
- ATGTCTGGGCAACATTACTGCTTAAGGTGGAACAATTACCAAAGCAACATGACTTCAGTTTTTCACCAGCTTCTTCAAAATGAAGCGTTCGTGGATGTTACATTAGCCTGTAAGGATTTATCCCTTAAAGCTCACAAAGTGGTGCTTTCCGCATGTTCCTCATATttccaaaaactattattagaaAATCCTTGCAAACATCCCACGATAATTATGCCACAAGATGTATGTTACGCTGATCTCAAATTCATCATTGAATTCGTATACAAAGGAGAAATCGACGTTTCTCAAGCGGAGTTACAGTCGCTTTTAAAAACAGCCgaccaattgaaaataaaaggtCTTTGCGAGTCCGAAGACAAGGAAAATTCGCTGTTGCCACAATTTACGCCAAGAGGgtttccaaaaatttctaaGGTATCTTCACAGTACAGAAATTTAGATAGTAACAAGAGGCGTAAAATTCAAGACTTTGATCCAAGTAATTTCTCAGATAGGGAAGAAGATGTTAAAGAATCTACTGTAGAAGATAATGTTTCTGATTATGATAGTGATGTACCGTTAGTTGTTGATGAGggaccaaagaaaaaaaaagtgactcAGTCTACGCCTATTAACATGAGCAGTCATGGTCTACTGGCTGGACAGGCTCTATTCTCCCAGTTATGCGATAACGACGACTTTCCACCTGAGCCACCGGCTCCTAGTGCAACGCCAGTCGGTCATGTTGATTTACAAGAACATTCACCTACACGAACATTGTTGCAATCATCTCATAGGACCGATCTATCAGACGTGCAcgtaaaatatgaagaaatcaAAAAGGAAGCGGTCGTTAAATTTGAAACCTTAAGATCGTACGATCACGATTCAATGATGGATATGGACGCCACTCATTTATCAGGACCCGATCATTCTATGGAAAGTCATGAGGATGCTGAAAGGGCGATGCATTCCATGATGGTTACGCCGGAATTAATGGGAATAATGCCCGGAGGTTCGGGAAGATTAgATTCGTCAAATGGTGATCACAATAAAAGTAACGGACATTCGGATCACCTCGCCGCAAGATCACACGGCGGTGGCCCGAAAACGTGGACCCAAGAAGATATGGAATTAGCGTTAGATGCCTTAAGAAATCACAATATGAGTCTGACTAAAGCTTCGGCTACATACGGAATTCCTTCCACTACGTTATGGCAAAGGGCGCATAGATTAGGGATAGATACACCTAAAAAAGAAGGGCCTACGAAATCGTGGactgaagaaaatttaaattccgcTTTAGAAGCTTTAAGAACTGGAACGATTTCGGCGAATAAAGCTAGCAAAGCCTACGgtATACCTAGTAGTACGTTGTATAAAATAGCTAGGAGAGAGGGAATAAAATTGGCGGCGCCTTTTAATGCGGCTCCCACGACTTGGTCGCCGGAAGACTTAGAAAAAGCTTTAGAATCAATTAGGTCTGGCCAGTCGTCTGTGCAAAAAGCTTCTACGGAATTTGGAATTCCTACTGGCACGTTGTATGGCAGGTGCAAGAGGGAAGGCATAGAATTATCCAGATCAAATCCAACGCCGTGGTCGGAAGATGCAATGGGAGAAGCTTTAGAAGCCGTTAGGTAA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACKDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESEDKENSLLPQFTPRGFPKISKVSSQYRNLDSNKRRKIQDFDPSNFSDREEDVKESTVEDNVSDYDSDVPLVVDEGPKKKKVTQSTPINMSSHGLLAGQALFSQLCDNDDFPPEPPAPSATPVGHVDLQEHSPTRTLLQSSHRTDLSDVHVKYEEIKKEAVVKFETLRSYDHDSMMDMDATHLSGPDHSMESHEDAERAMHSMMVTPELMGIMPGGSGRLDSSNGDHNKSNGHSDHLAARSHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003877;
- 90% Identity
- iTF_00151822;
- 80% Identity
- iTF_00003877;