Acer074350.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- -
- Assembly
- GCA_030710515.1
- Location
- JALBCR010002869.1:43158-44840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.8 3e+03 1.3 1.6 15 23 3 12 1 12 0.90 2 17 0.12 41 7.2 2.0 1 23 14 36 14 36 0.97 3 17 0.00018 0.062 16.1 2.7 1 23 47 70 47 70 0.98 4 17 0.064 22 8.1 1.6 1 23 72 94 72 94 0.97 5 17 0.00011 0.039 16.7 2.8 1 23 105 128 105 128 0.98 6 17 0.21 72 6.4 1.5 1 23 130 152 130 152 0.97 7 17 0.00027 0.093 15.5 2.5 1 23 163 186 163 186 0.98 8 17 0.00011 0.039 16.7 2.9 1 23 214 237 214 237 0.97 9 17 3.3 1.1e+03 2.6 0.7 2 23 240 261 239 261 0.81 10 17 0.00036 0.12 15.1 3.4 1 23 285 308 285 308 0.98 11 17 0.11 38 7.3 2.0 1 23 310 332 310 332 0.97 12 17 0.0017 0.59 13.0 2.7 1 23 343 366 343 366 0.96 13 17 0.015 5.3 10.0 0.7 2 23 369 390 368 390 0.97 14 17 0.00036 0.12 15.1 3.4 1 23 414 437 414 437 0.98 15 17 0.22 74 6.4 2.5 1 23 439 461 439 461 0.97 16 17 0.0017 0.59 13.0 2.7 1 23 472 495 472 495 0.96 17 17 2.5 8.5e+02 3.1 0.2 2 12 498 508 497 513 0.84
Sequence Information
- Coding Sequence
- ATGGGTCATTTACAAACGCATATGAAAAGTAAACATTCTTTCAAATGCGAcgaatgcgactacaaaactttAACGGAAATGGAATTTTTGAATCACAAAAGAAAACACACAGGTGCACAAAATGTCGATGAAAAAAGGTTTAAGTGTAACTTGTGCGATTACAGAAGCGCCCGAATCGGTCATTTACAAACGCATATGAAAAGTAAACATTCTTTCAAATGCGAcgaatgcgactacaaaactttGACGGAagtagaatttttaaatcacaaaagaAAACACACCAGCGAACAAAATGTTGACGAAAAAAGGTTTAAGTGTAACTTGTGCGATTACAGAACCGCCCGAATCGGTCATTTACAAACGCATATGAAAAGTAAACATTCTTTCGAATGCGACGAATGCGACTACAATACTTTAACGGAAATGGAATTTTTTAATCACAAAAGAAAACACACCAGTGTACAAAATGTCGATGAAAAAAGGTTTAAGTGTAACTTGTGCGATTACAGAAGCGCCCGAATCGGTCATTTACAAACGCATATGACTACTAAACACTCTCTcaaatgcgactacaaaacttcAACCGTTGTTACCAAATTGTCTAGGCGCAAATACGTAATCACCGGAGTAAAAAAGTTTAGATGCAACTTGTGCGATTATAGAAGTGCTCGAATCAGTCATTTGCAAACGCATATGAACAGTAAACACTCTCTTAAATGCGAcgaatgcgacttcaaaactttATCCAACCTTGAATTTTTGGATCACAAAAAAGTACACGCCAAGGATCAAGGGCACTCTAACGCCAATTTGTCCAAGCGCAAATCGGTAAGCAccgaagaaaaaaagtttaagtgcAACTTGTGCGATTTCAGAAGTACTCGAATCGGTCATTTGCAAACGCATATGAACAGTAAACACTGTTTCAAATGCGAcgaatgcgactacaaaactttgacggaaatacaatttttaaatcacaaaagaAAACACACCAACGAGCAAAACGacaatgaaaaaaagtttaagtgcAACTTGTGCGATTACAGAAGTGATCGCATTGGTCATTTACAAACACATATGACTAATAAGCACTCTCTTAAATGCGAcgaatgcgactacaaaacttcAAATGACGTTGAATtttttgatcacaaaaaaatacacACCAAGGAACAAGGGCACTCAGACGCCAATTTGTCCAAGCGCAAATCGGTAAGCAccgaagaaaaaaagtttaagtgcAACTTGTGCGATTTCAGAAGTACTCGAATCGGTCATTTGCAAACGCATATGAACAGTAAACACTGTTTCAAATGCGACGAATGCAACTACAAAACTTTGAcggaaatacaatttttaaatcacaaaagaAAACACACCAACGAGCAAAACGacaatgaaaaaaagtttaagtgcAACTTGTGCGATTACAGAAGTGATCGCATTGGTCATTTACAAACACATATGACTAATAAGCACTCTCTTAAATGCGAcgaatgcgactacaaaacttcAAATGACGTTGAATTTTTGATCACAAAAATACACACCAAGGAACAAGGGCACTCAGACGCCAATTTGTCCAAGCGCAAATCGGTAAGCACcgaagaaaaaagtttaagtgCAACTTGTGCGATTTCAGAAGTACTCGAATCGGTCATTTACAAACGCATATGA
- Protein Sequence
- MGHLQTHMKSKHSFKCDECDYKTLTEMEFLNHKRKHTGAQNVDEKRFKCNLCDYRSARIGHLQTHMKSKHSFKCDECDYKTLTEVEFLNHKRKHTSEQNVDEKRFKCNLCDYRTARIGHLQTHMKSKHSFECDECDYNTLTEMEFFNHKRKHTSVQNVDEKRFKCNLCDYRSARIGHLQTHMTTKHSLKCDYKTSTVVTKLSRRKYVITGVKKFRCNLCDYRSARISHLQTHMNSKHSLKCDECDFKTLSNLEFLDHKKVHAKDQGHSNANLSKRKSVSTEEKKFKCNLCDFRSTRIGHLQTHMNSKHCFKCDECDYKTLTEIQFLNHKRKHTNEQNDNEKKFKCNLCDYRSDRIGHLQTHMTNKHSLKCDECDYKTSNDVEFFDHKKIHTKEQGHSDANLSKRKSVSTEEKKFKCNLCDFRSTRIGHLQTHMNSKHCFKCDECNYKTLTEIQFLNHKRKHTNEQNDNEKKFKCNLCDYRSDRIGHLQTHMTNKHSLKCDECDYKTSNDVEFLITKIHTKEQGHSDANLSKRKSVSTEEKSLSATCAISEVLESVIYKRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -