Acer045398.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- -
- Assembly
- GCA_030710515.1
- Location
- JALBCR010001645.1:38413-41102[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0061 2.1 11.3 3.2 1 23 116 138 116 138 0.98 2 17 0.0003 0.1 15.4 0.1 1 23 140 162 140 162 0.99 3 17 0.0039 1.3 11.9 5.0 1 23 168 190 168 190 0.98 4 17 0.0015 0.53 13.2 3.1 1 23 208 230 208 230 0.97 5 17 0.14 47 7.0 2.9 2 23 237 258 236 258 0.97 6 17 0.16 55 6.8 3.4 1 23 264 286 264 286 0.96 7 17 0.35 1.2e+02 5.7 2.2 1 23 292 314 292 314 0.95 8 17 0.004 1.4 11.8 3.0 1 23 446 469 446 469 0.97 9 17 0.0026 0.89 12.4 4.3 1 23 477 499 477 499 0.98 10 17 0.0019 0.65 12.9 6.4 1 23 505 527 505 527 0.98 11 17 0.002 0.68 12.8 2.8 1 23 533 555 533 555 0.98 12 17 0.00021 0.071 15.9 4.1 1 23 561 583 561 583 0.98 13 17 0.06 21 8.1 0.7 1 23 589 611 589 611 0.98 14 17 5.4e-05 0.019 17.7 0.8 1 23 617 639 617 639 0.99 15 17 4e-05 0.014 18.1 2.3 1 23 645 668 645 668 0.96 16 17 0.00032 0.11 15.3 1.4 2 23 676 698 675 698 0.96 17 17 4e-05 0.014 18.1 1.6 1 23 707 729 707 729 0.98
Sequence Information
- Coding Sequence
- ATGGCAGGAATCATAACAACAACAACATGCAGAATTTGTTTACAAGAATTGGGGCAATTTGTTCAAAGTTACTTACTAAACGCCGAGGACGATTTAATGCTGCAAACGAAGTTATTGGAATTCTTCCCAGAAATCGATCTTAACATCACTCCTAATCCACTGGTTTGCATCGAATGCTCGACAATGATTATCAAAGTACATCAATTCAAGCAATTGTGCGTTCAAACCGAAAgcgttttaaaaaatcgaaGGTTAAAACTACCGCtcattaaagaagaaaaaatcaaagaagaatTTGTCGAGGTTGTGATCGAAGTAGACGAATCTATCTCGTATCCGACTTTTTATTATTGTCACAATTGCAATTATGCCACCAGTGAAAAGGACGATCTCGGTCGACACGCTCACACACATCGTTACGAATGCGAAAAATGCAGTTACGTAACGCCTAATAGTATCTCGTTAATGGCTCATCAAGAAACACACTTTGATGTCGGACCGTTTCAGTGTAACATTTGCGATCTTGTCTGTAGCAACACGCACACTTTTAAAATGCACGTTACAACACATACCCTTGATGAGCTGTCTCAATTCTCTAATAAAGTTAGCGATGAGAAATTGTTCGATTGCTATTTTTGCGATTATAGCACGAATAGTAACAATACTTTAGAACATCATATGATGTCGCATAAAATCAGCGACCGACTTCAGTGTAACGTGTGCAAATTCGTTACTTGTTCGACGAGCGTTTTTAAGTCGCACTTGGATACGCACAAAAGTGTTAGAGTTTACAATTGCGTTTTATGTGATTTttctactaaaataaaaaaccatttgAAGGTTCATTCAAGATTTCACGAAAAAGTGAAACCATTTGCATGCGTTTTGTGCCGATTTTGCGGTGTGACGCATTCGGATTTAAAAGAGCACCTCGAGCAGCATAACgtcaaagtttttaattgtagCAAATGTGAGTATTGGAGCTGGATTAAGTTTAATGTATTAAAACACACTTATCAGATGCATGAagatgaaaaaGACCTGAAGACCCCCCAAAATCCGATAACATGCACCCAATGCGCTACCAGAATCGACGAACTTTATCAATTCAAGCAACTGTGCGCACGAACCGAAaccatcataaaaaaattaaacttcgaAGCATTACCGTTTAAAGACGTATTAAAACTATGTAAACAAGAAGAATTCTACAAAAGTGTTAAGAAGGAACCACTCGATGATGATGATGGTTTATGTACTTTGGAAACTGTTGGTGACGAATGCGTTGAACTTAATACCGAATTACCGCCGTTCATTATCAAGGATTCTATAGATTTTCGCTGCGACTCTTGCGATTATCgctcagaaaaaaaaaaaaacctagcACGACATATTGTAACTTGTCATcgaactaataataaaaaactttttaaatgtgaTCAATGTGATTATTCGACGCCTCACAATTTCACATTAACAGATCACAAAAAAAGACATTCGAACGTTAAACCCTTTAAGTGCAACATTTGCGATTACGCTTGTATTCACAAACATACTCTTAAGTTGCACGTGCTCAGGCATGTGGGTGAGAAACCGTACAAATGTACTGTGTGTGATTATACATCGGCTTACAAGAATAAACTACATATTCATCAGTTATCACATACTGGTGAGAAATTGTTTGAGTGTCACGACTGTGGTCATCGTACAAATAGGAAAGATACCCTAAAGTATCACGTGATGATACATCAAAACATCAAGCCGTTTCAATGTAAGATATGCATTTTTAGTACTCGTGCCAGAGCTGTCTTGAAAAGTCATATGCAAACACATGAAGGTGTTAAAGCTTATAAATGTGACCAATGTGATTTTGCTACTTCAATGAAAAACAGTTTGCAACTTCACATGAGAATTCATGACGATGTAAAACCTTTTCATTGTGAAATATGCGATTTCTCGTCTCGACAGCGTTCTAATTTGAAGGCGCACATCAATCAACGACataataataacgaaaaaaaaatgaagtgtgATAAATGTGACTATAAGTCTAACAGCAAGACGAATTTAAATACGCACATAATTCGTATGCACAATAAAGAACAACTTGTGAAACCACACAAGTGTAGCATATGCAAGTATGCGACCTCTCATAAAGCCGCTTTAGCCGCTCACATACGTTCGCACACGGGCGAAAAACCTTTCGTTGCACCACATGCGATTATAGTAGCACCCAAATGTCGCATGTAA
- Protein Sequence
- MAGIITTTTCRICLQELGQFVQSYLLNAEDDLMLQTKLLEFFPEIDLNITPNPLVCIECSTMIIKVHQFKQLCVQTESVLKNRRLKLPLIKEEKIKEEFVEVVIEVDESISYPTFYYCHNCNYATSEKDDLGRHAHTHRYECEKCSYVTPNSISLMAHQETHFDVGPFQCNICDLVCSNTHTFKMHVTTHTLDELSQFSNKVSDEKLFDCYFCDYSTNSNNTLEHHMMSHKISDRLQCNVCKFVTCSTSVFKSHLDTHKSVRVYNCVLCDFSTKIKNHLKVHSRFHEKVKPFACVLCRFCGVTHSDLKEHLEQHNVKVFNCSKCEYWSWIKFNVLKHTYQMHEDEKDLKTPQNPITCTQCATRIDELYQFKQLCARTETIIKKLNFEALPFKDVLKLCKQEEFYKSVKKEPLDDDDGLCTLETVGDECVELNTELPPFIIKDSIDFRCDSCDYRSEKKKNLARHIVTCHRTNNKKLFKCDQCDYSTPHNFTLTDHKKRHSNVKPFKCNICDYACIHKHTLKLHVLRHVGEKPYKCTVCDYTSAYKNKLHIHQLSHTGEKLFECHDCGHRTNRKDTLKYHVMIHQNIKPFQCKICIFSTRARAVLKSHMQTHEGVKAYKCDQCDFATSMKNSLQLHMRIHDDVKPFHCEICDFSSRQRSNLKAHINQRHNNNEKKMKCDKCDYKSNSKTNLNTHIIRMHNKEQLVKPHKCSICKYATSHKAALAAHIRSHTGEKPFVAPHAIIVAPKCRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -