Acer065224.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- -
- Assembly
- GCA_030710515.1
- Location
- JALBCR010002478.1:153521-155218[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0028 0.97 12.3 1.4 2 23 49 70 48 70 0.94 2 17 0.0029 0.98 12.3 1.7 1 23 72 94 72 94 0.98 3 17 0.0043 1.5 11.7 0.4 2 23 101 122 100 122 0.96 4 17 0.0024 0.81 12.6 0.9 1 22 141 162 141 162 0.96 5 17 0.0022 0.76 12.6 3.0 1 23 191 213 191 213 0.99 6 17 0.0026 0.91 12.4 1.9 1 23 219 241 219 241 0.98 7 17 0.0002 0.07 15.9 4.2 1 23 247 269 247 269 0.98 8 17 9.8e-05 0.034 16.9 1.4 1 23 275 297 275 297 0.98 9 17 0.004 1.4 11.8 3.2 1 23 303 325 303 325 0.98 10 17 0.0002 0.07 15.9 3.0 1 23 331 353 331 353 0.98 11 17 0.00023 0.081 15.7 3.2 1 23 359 381 359 381 0.98 12 17 0.031 11 9.1 3.2 5 23 391 409 390 409 0.96 13 17 6.8e-05 0.023 17.4 0.2 1 23 415 437 415 437 0.99 14 17 0.0011 0.37 13.6 1.4 1 23 443 465 443 465 0.98 15 17 3.9e-05 0.013 18.2 2.0 1 23 471 493 471 493 0.98 16 17 0.0023 0.81 12.6 1.7 1 23 499 521 499 521 0.97 17 17 3.6e-05 0.012 18.3 2.0 1 23 527 549 527 549 0.99
Sequence Information
- Coding Sequence
- ATGCAAAACGAACACATTGCCATCAAAGAGGAAATTAAAGAGGAAAACAATGTGGAGACGGAAGCGATTGTTGCAGACCAATATGTATTATTTAACACTGATATACCTTTGTTTATCAAAGAAAGCGTTCAGGTAAATATTCTCTACTGTCATCAGTGCAATTATGGCActaatgataaacaaaatttaactgaTCATATTTTTGCTCACCAGTTTAAATGTGACTGGTGCAATTACATGACTCATGATAATTCTGTGTTAAAAACACACCAAGAAATTCATACTCATAGTGAACTCTTACGATgtaacatttgtaattattcttGCGCGGAAATGGGTTTATTAGTTAAACATTTAGCTATGCATACTGCTACAAATGAAGTGAAATACCAGCAGCCATTGCAGATCACAGAAGATTTATTCGAATGTCATGATTGTGGTTATAGAACAAActcgaaaaatattttgaaaattcatctgaGAACTTGCTTAAATGGAGAAAAGTCTTCATTAAAAAAGCAGCAAAAACTCTTCAAACGTCACAAAAGGATTCAATCTGAAGATAAGCTGTTCAAATGCAAATTGTGTGAATACACCGGTAAACATTCCAGTAGCATAAAAATGCACTTGAGAATACATTCAGGTGAACGAAGTTTTAGCTGCGACCAATGCGACTACAAGGCGTACACCAATAGGATGTTGAAAAGTCACAAAAGAGTTCATTCTGATGAAAAACCccataaatgcaatttgtgtgatcACACCACTAAATACGTTGATAACTTAAAAGTACACATGAAGATACATTCTGGCGAACGAAATTTTAGCTGCGACCAGTGCGACTACAAGACGTACTCCAATGGCGAGTTGAATCGTCACAAAAGGATTCATTCTGAAGATAAGCCGTTCAAATGCAAATTGTGTGAATTCACCAGTAAACATTCCAGTAGCATAAATGTGCACTTGAAAATACATTCAGGTGAAAGAAGTTTTACCTGTGACCAGTGCGACTACAAGGCGAAACACAATGGGAACTTGAAAAGTCACAAAAGAGTTCATTCTGAAGTAAAACcatataaatgcaatttgtgtgattacaCCTGTAAATACACAGCCAGTTTAAAAACGCACTTGCTGATACATTCGGGTAAACTAAATTTTAGCTACGACCATTGCGACTACAAGACGAACCACAATGTGAACTTGAAAAGTCACAAAAGAGTTCATTCTGAAGTAAAACCATATAAATGCAACTTATGTGATTACATCGGCAAATACGCAGGTGACTTAAAAATACACATGAAGATCCATTCAAGAGAACGAAATTTTAGCTGCAACCAGTGCGACTACAAAGCGTACACCAATGGGATGTTGAAAAGTCACAAACGAGTTCATTCTGACGAAAAGAcatataaatgcaatttgtgtgattacaGCTGTAAATACGCAGCTAACTTTAAAATACACATGGTGATTCATTCGGGAGAATCAAATTTTAGCTGCGACAAGTGCGATTATAAGACATACTCTAATGGGAAATTGAAAAGTCACAAAATAGTTCATTCTAAAGAAAGACcatataaatgtaatttgtgtgaTTACACTAGTAAATACGCAGGTCACTTGAAAATACACTTGAAGATACATTCGAGAGCTGGTACTATTGCGACTACAAAACGTACTCCAATGACAAACTAA
- Protein Sequence
- MQNEHIAIKEEIKEENNVETEAIVADQYVLFNTDIPLFIKESVQVNILYCHQCNYGTNDKQNLTDHIFAHQFKCDWCNYMTHDNSVLKTHQEIHTHSELLRCNICNYSCAEMGLLVKHLAMHTATNEVKYQQPLQITEDLFECHDCGYRTNSKNILKIHLRTCLNGEKSSLKKQQKLFKRHKRIQSEDKLFKCKLCEYTGKHSSSIKMHLRIHSGERSFSCDQCDYKAYTNRMLKSHKRVHSDEKPHKCNLCDHTTKYVDNLKVHMKIHSGERNFSCDQCDYKTYSNGELNRHKRIHSEDKPFKCKLCEFTSKHSSSINVHLKIHSGERSFTCDQCDYKAKHNGNLKSHKRVHSEVKPYKCNLCDYTCKYTASLKTHLLIHSGKLNFSYDHCDYKTNHNVNLKSHKRVHSEVKPYKCNLCDYIGKYAGDLKIHMKIHSRERNFSCNQCDYKAYTNGMLKSHKRVHSDEKTYKCNLCDYSCKYAANFKIHMVIHSGESNFSCDKCDYKTYSNGKLKSHKIVHSKERPYKCNLCDYTSKYAGHLKIHLKIHSRAGTIATTKRTPMTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003198;
- 90% Identity
- -
- 80% Identity
- -