Acer066991.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- -
- Assembly
- GCA_030710515.1
- Location
- JALBCR010002553.1:280262-281956[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.099 34 7.5 4.1 10 23 2 15 1 15 0.95 2 16 0.0026 0.88 12.5 1.7 2 23 22 43 21 44 0.93 3 16 5.2e-05 0.018 17.8 0.4 1 23 49 71 49 71 0.97 4 16 0.00058 0.2 14.5 1.7 1 23 81 103 81 103 0.98 5 16 5.8e-05 0.02 17.6 3.3 1 23 109 131 109 131 0.96 6 16 5.2e-07 0.00018 24.1 1.5 1 23 137 159 137 159 0.98 7 16 2e-08 6.8e-06 28.5 3.7 1 23 165 187 165 187 0.99 8 16 0.001 0.36 13.7 5.0 5 23 196 214 193 214 0.95 9 16 0.0038 1.3 11.9 2.0 1 23 265 287 265 287 0.96 10 16 0.00027 0.091 15.5 2.1 2 23 303 324 302 324 0.95 11 16 0.00013 0.044 16.5 0.2 3 23 353 374 352 374 0.98 12 16 0.19 67 6.5 4.9 1 23 378 400 378 400 0.98 13 16 2.6e-06 0.0009 21.9 1.2 1 23 411 433 411 433 0.99 14 16 4.8e-05 0.017 17.9 0.2 1 23 442 464 442 464 0.98 15 16 4.8e-05 0.016 17.9 3.1 2 23 470 491 469 491 0.98 16 16 1e-06 0.00034 23.2 2.3 1 23 495 517 495 517 0.98
Sequence Information
- Coding Sequence
- ATGTTTGTTCACAAGTCGCATCTGACAAGTCACATTAGGAAGCACACTGCTGATTATGTTACATATTGTGCCGAGTGCGGCAAGGGCTTTTTTACTCAGGCTTCCTACACGTATCATTCGAATAATCACCATAGGAAACTGCAGCACGTGTGCGATAAGTGCGGTGCCAGGTTGAGTTCCAACTCGGCTTTGAAAGAACATTTAATCACCCACGCTGCCAATTATGGACAGGAACGATCACACGTTTGTGATTTGTGcggcaaaacttacttaaaCGGTCGTAATTTGCGCAGTCATTTAAAGACGCATCAGAACGATAAGTGTCACGACTGCCACGTGTGCGGCAAAAAGTTGAGCAGTAAGAAAGGATTGCAGATTCACTTGAAAATGCACATTGGTGACAAAAGCTTTATTTGTGAGTTCTGCAACAAGGGATTCACATCTAAAGAGTACTTAACTGTACACCAACGCACGCATACTGGAGACAGACCATTTAGATGCGACACTTGCGGTAAGTGCTTCACGCAGAAGTCTTCTTTAAACGTACACATTAGGAGCCATACTGGTGAGCGCCCTTTTAAATGTCACTGCGGAAAAAGTTTCATCACAAAAACCCATTTAGCCGCGCACAATAAAACGCATGACGGCACCAACATCGAATTTGCTTACGTGCCACAAGCTATCatGTTTATAAGGTTCGAAACCATTTGGAATAATGACGCACCCGAATGGTCCGAAGACGAAATCAAACCGAGTATAACCGAAGAACCTACGTTTAAACGTGAAATTCATTGCAAATGTAACATCTGCAGTAAGGTCTTGAAGTTTCCGGAGACTTTCGACGAACACATCAAGTCTCATATACGTATCCAACAGCCCAACGAGATCAAGCTTAAGCAATCGTGCAACTGTAAGGTTTGCGGGAAAACAATTTCGTTTCCCGATAGCTTCAGCAAACACATGCAAGAGCACGCGAGGAACTCTGAACAATTCGCAATCAGTTCCCTCAAAAACGGGGACAAAGGCGTAGTACGATTTGGTGGCTACTCTGTTTTATGTCGCATTTGTGATCTGGTGTTTTATACTAGACCCGATTTCATTCGTCATATAAACACGATCCATAAAAAGACTTACCGCTGCGACATCTGCAACTTGTGTTGCGGTAACTACATCAGCTTCAGTTTGCACAAACGCTTGCACAATCGCAGTAAAAGAAATATTGCTTCGACCTATAGGTGCGACGAGTGCAACATCGAGTTTGCTTATTCGAGCGACTTGAGGCACCATTTGAAAATACATCCTAAGGTGAACGCTAGTGTGGAATTCACTTGTGACGTCTGCAAGAAGGTATTGTCGTCGGCCGCGAGTCTTCGAGTTCACAAacaaattcacaaacaaaaccCTAATAAGTGCACGTATTGTCGTAAGTCTGTATCTAAGCAAGGGTTTCTCAAACGTCACATGATGAAACATGTAAGCTCATATTCTTGTAAGGACTGCAAAAAAAGCTTCACGAAGAAAGAGGAGTTAGCTGCCCACCGTAGATTCCACAGagtataa
- Protein Sequence
- MFVHKSHLTSHIRKHTADYVTYCAECGKGFFTQASYTYHSNNHHRKLQHVCDKCGARLSSNSALKEHLITHAANYGQERSHVCDLCGKTYLNGRNLRSHLKTHQNDKCHDCHVCGKKLSSKKGLQIHLKMHIGDKSFICEFCNKGFTSKEYLTVHQRTHTGDRPFRCDTCGKCFTQKSSLNVHIRSHTGERPFKCHCGKSFITKTHLAAHNKTHDGTNIEFAYVPQAIMFIRFETIWNNDAPEWSEDEIKPSITEEPTFKREIHCKCNICSKVLKFPETFDEHIKSHIRIQQPNEIKLKQSCNCKVCGKTISFPDSFSKHMQEHARNSEQFAISSLKNGDKGVVRFGGYSVLCRICDLVFYTRPDFIRHINTIHKKTYRCDICNLCCGNYISFSLHKRLHNRSKRNIASTYRCDECNIEFAYSSDLRHHLKIHPKVNASVEFTCDVCKKVLSSAASLRVHKQIHKQNPNKCTYCRKSVSKQGFLKRHMMKHVSSYSCKDCKKSFTKKEELAAHRRFHRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -