Acer052503.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- -
- Assembly
- GCA_030710515.1
- Location
- JALBCR010002188.1:156510-166018[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00012 0.04 16.7 2.3 1 23 141 163 141 163 0.98 2 14 0.00072 0.25 14.2 5.8 2 23 170 191 170 191 0.97 3 14 0.015 5 10.1 1.0 1 23 201 223 201 223 0.93 4 14 0.00031 0.11 15.3 3.7 2 23 298 320 297 320 0.96 5 14 0.0002 0.067 16.0 7.0 1 23 379 401 379 401 0.97 6 14 1e-05 0.0036 20.0 0.8 2 23 408 430 408 430 0.95 7 14 9.8e-07 0.00034 23.2 0.6 1 23 435 457 435 457 0.98 8 14 1.5e-05 0.0051 19.5 3.6 1 23 467 489 467 489 0.97 9 14 6.7e-08 2.3e-05 26.9 1.4 1 23 496 518 496 518 0.97 10 14 2.9e-06 0.001 21.7 1.2 3 23 530 550 528 550 0.96 11 14 0.00027 0.093 15.5 5.4 1 23 556 578 556 578 0.99 12 14 2.9e-05 0.01 18.6 1.7 1 23 584 606 584 606 0.96 13 14 1.6e-07 5.5e-05 25.7 0.3 1 23 612 634 612 634 0.99 14 14 0.00043 0.15 14.9 0.1 1 23 640 664 640 664 0.92
Sequence Information
- Coding Sequence
- atgattaataagGATACACaattaattatgcaaaaaatttgCCGGTCGTGCATGTGCGAAAGCTCCGAAATGCGAAATGTTTTTGAAACTAAAGAAGGTGAAGAAGGCGAAATACAGCTCGCTGAAATGTTAATGGCTTGTACTTCAATTCAGatactCTCCGACGATGGACTTCCAGTTCAATTGTGTTTTTCATGTGAAATTAAACTGGAGTCCGCTTTCGAATTTAAACAGCAATGTCAGAAGGCAGATACAGCTTTAAGAGAACTAACAAATCAGCAAGGTCAAGAGGAACCCATTAAACAGGAGTCATTTGATATAATCATTAAACCAGATTTATCTCATGCTTACAACGATCAAGCCGGTGATTCTGAAAGCAGCGAGACGCAGAGGAATGTTAAATCTTCTGCTTCTAATAGTTTTACTTGCACATACTGTCAGAAGATTTTACGCACAAAAAAAGGTTTGAAAATACACGAACGACGACACACAGGGGAAAAGTTACGCTCTTGTCATTTGTGTCAAGCAAAATTCACTCGAACTAATCATTTAAGGAGACATATAGAAACGCACAATAAATCTAACTTAAATACCACAAGTTATATATGTATCGAATGTGGCGCTACTTTCACCAAAGCTTGTTATTTAATCAATCATAAAAAGGAGCACCAAGTGCCGGGTGAAGATTTCAAGAAAGAAATTGATTGTGAATTTGATAGTGCTCAAAATGCTGCTGAATTAGATTATGAAAGTGGTTCTAAGAATGGGGACGAGACTTGGATGGAATGGAAGGATGAGGGTGGAGAAACTTTAAGGAAATCGAAGGATGGTTTAGagagtttaaaacaaaaagaaaatgacaaATCTTGTGATAAGGATAAGAAGATAATGGAATGTGAATTTTGTGATCGCAAATTTAAGTACAAAAAAAGCTTCATTCATCACTTACAAACAGAACATGGAATGTCTGACGAAGCTGACATTGTAGCAATTACTATGAGTAAAGGAGAAAGCACGCAACTTGATACGGCCGATTGTCATGAAATAGAAGATCCACGCGAATTGAAAGATCTAACAAATCCGGACAACTCGGACGACGGTATGGACGATATGGATTTTGTGAATAGAAAAGTACATACGTGCCACGTGTGTAAAGCCAAATTTACCCGAGCCAATCATTTAACCAGGCACATGACCCTACATAGATCGGTACTTACAGAAAAATGCGAAAAATGTGATAAAGCTTTTGCCACTCCCGAACATTTGTCTAAGCACGTTCAAGAAGATCACATTGATAAACCCTACATATGCAACGTGTGCGATAAACCGTTTAGTAGAGGGGAACATCTCATTAGACATTTGAAAGTACATAATAATAGTGATGGTCAGAAAGAAACTCATAAGTGCTCCATATGCGATAGAGAATTTAGTCGATCGGATCATCTAGCGCTACATACAAAACTCCATTTGCAGCAAGACAAGAGACATGTTTGTTCAGAATGTGGAAAAGCTTTCAATCGACTGGATAATTTGAAAACGCATCAAAGAATTCATGCAGGGCTGAAAGACAATTCGAGGTTGCATTTATGCGTTTACTGCGGCAAAGAATTTAATAATTCGAGTAACATGatAGTGCATATCCGTCGTCACACTGGAGAAAGACCTTACAAGTGCACCATATGTAATAAAGGATTTCCAAGATCGCACGATTTAAAGTGTCACGAACGCACGCATTCAGGAGAGAAACCTTATTTGTGTACGTTATGCGGAAAGTCCTTCAACAAGAGCAACAAATTGTTACGACATTCAAGAGTGCATACAGGAGAAAGACCGTACGTGTGTAACTTATGCGGCCGCGCGTTTACTCAATCTAACGATCTGGCCCTTCACATGCGTAGGCACACTGGTTCACGACCTTATGCGTGCGGCGTTTGTCCTTCACGTTTTATACAATCCGGACAATTAAAAGCTCATCGAAGATCGACGGGACATTGGATGGAAACATTGCCAGATTTAAAAGGAGGACATCGAGTGGAACCGGTTACGCCTCTTGTAAATCCTACGcctattaaattcaaaactcaCGGTAAAATAAAGGTCGATGAGGAGGAACCTAAAGAACCAAGAATCATAAGTCACACAGTGGGAATTATGGGTAATGTCAATGCACAGGTAGATTTGCAACAACAGACGCATCCGATTATAATAGATagtacaaaattaattcaacaaTTCCACAATGGtagttttgttgatttttctgcCGTTATGAATGCTGGTCAAGAGGTGGTGGAAGAGAACGGtgacaaatttaaaagtgaaatacaAACTTATAGTGTAACCGATGTGGCACATGAAGAGGTCCACTTGGGCGTCGAGAAAATTGAAATGTCCGAAGAAAGCGATGTTCATTTTACCACAATAGCTTCGACGACGGGTACAGCATTTAATAATGTCGAACGTTATAATTATCAAAGTTATGGATAG
- Protein Sequence
- MINKDTQLIMQKICRSCMCESSEMRNVFETKEGEEGEIQLAEMLMACTSIQILSDDGLPVQLCFSCEIKLESAFEFKQQCQKADTALRELTNQQGQEEPIKQESFDIIIKPDLSHAYNDQAGDSESSETQRNVKSSASNSFTCTYCQKILRTKKGLKIHERRHTGEKLRSCHLCQAKFTRTNHLRRHIETHNKSNLNTTSYICIECGATFTKACYLINHKKEHQVPGEDFKKEIDCEFDSAQNAAELDYESGSKNGDETWMEWKDEGGETLRKSKDGLESLKQKENDKSCDKDKKIMECEFCDRKFKYKKSFIHHLQTEHGMSDEADIVAITMSKGESTQLDTADCHEIEDPRELKDLTNPDNSDDGMDDMDFVNRKVHTCHVCKAKFTRANHLTRHMTLHRSVLTEKCEKCDKAFATPEHLSKHVQEDHIDKPYICNVCDKPFSRGEHLIRHLKVHNNSDGQKETHKCSICDREFSRSDHLALHTKLHLQQDKRHVCSECGKAFNRLDNLKTHQRIHAGLKDNSRLHLCVYCGKEFNNSSNMIVHIRRHTGERPYKCTICNKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNLCGRAFTQSNDLALHMRRHTGSRPYACGVCPSRFIQSGQLKAHRRSTGHWMETLPDLKGGHRVEPVTPLVNPTPIKFKTHGKIKVDEEEPKEPRIISHTVGIMGNVNAQVDLQQQTHPIIIDSTKLIQQFHNGSFVDFSAVMNAGQEVVEENGDKFKSEIQTYSVTDVAHEEVHLGVEKIEMSEESDVHFTTIASTTGTAFNNVERYNYQSYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003946;
- 90% Identity
- -
- 80% Identity
- -