Acer066990.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- -
- Assembly
- GCA_030710515.1
- Location
- JALBCR010002553.1:275855-279748[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.7 1.6e+03 2.2 3.4 1 23 13 36 13 36 0.91 2 20 0.0032 1.1 12.2 3.0 1 23 42 64 42 64 0.95 3 20 3.8e-05 0.013 18.2 6.3 1 23 70 92 70 92 0.98 4 20 2.6e-05 0.0091 18.7 2.6 1 23 98 120 98 120 0.97 5 20 1.4e-06 0.00047 22.7 2.0 1 23 126 148 126 148 0.99 6 20 0.16 56 6.8 0.5 3 23 232 252 230 252 0.92 7 20 0.005 1.7 11.5 6.1 1 23 258 280 258 280 0.98 8 20 0.00027 0.091 15.5 1.8 1 23 286 308 286 308 0.98 9 20 8.4e-07 0.00029 23.4 2.0 1 23 314 337 314 337 0.98 10 20 6.3 2.2e+03 1.8 0.0 11 23 347 359 343 359 0.86 11 20 1.7e-07 5.9e-05 25.6 0.9 1 23 365 387 365 387 0.98 12 20 2.2e-05 0.0074 19.0 0.2 2 23 484 505 483 505 0.97 13 20 0.1 35 7.4 2.9 1 23 509 531 509 531 0.97 14 20 0.00062 0.21 14.4 0.4 1 23 566 588 566 588 0.97 15 20 1.4e-05 0.0049 19.6 0.5 1 23 594 617 594 617 0.98 16 20 0.0016 0.54 13.1 5.1 1 23 628 650 628 650 0.97 17 20 0.00019 0.065 16.0 0.9 2 23 656 677 655 677 0.97 18 20 0.00014 0.05 16.4 0.5 1 23 683 705 683 705 0.96 19 20 2e-05 0.0069 19.1 0.3 3 23 713 733 711 733 0.97 20 20 0.0015 0.51 13.2 0.3 1 22 739 760 739 760 0.94
Sequence Information
- Coding Sequence
- ATGCACACGAAATACTTCGATGCAACGCCCGACGCTTTCATGTGTAAGCTGTGCGGTCAACACTTACCGTCGAAGCAAAAGGTCTTGTGTCACATAAACACGAGTCACTTGCACGTGAGCACCTTTTTGTGTGACGTATGTGGTAAGTGTTTTTTGAAGGAGCATTCGCTTCGAGTACACGTACTGACGCATAGCGATGCGAAACCGTTTGAATGTCAAATTTGttcgaaaactttcaaacaCCAGTGTTCGTTGAAGGTTCATTTGAGTACTCACAACGACCAGTGCAGGTTTATATGCGAGGAGTGcggaaaaatttttaagaaaaagagcACCCTGGTCGATCACAAGAAACATCACGACGGAGATTTTCGGTTTCAGTGCGACATTTGCAACAAGAAGTTTGTATCGAAATCTGCTCAAAACAAGCACATGAAGAGTCATACGTTTGCTGACGCgttATGTTTGGATGAAGGTTCGATTCTTAGAAGGCTGATTATTGGCCCTTCTATGACTGTTACCGTTGCAAATCCGAGCACAATTACGCGTGATGTACCCGAGTTCAAATTTTCGCCTGAAAGTCCTCCGTTAAAAATCCGAATTAAGTTAGAGAATGAGAATGTATTCTTGGAAGAATCTTTCGGAGACGATAATGCGCCAAAACCTGTTGAAGAAACTAACGAGCGGGTGCATTGTGATGTGTGCGACGTGACTTTCAAAAATGGCATATCTTTTGCTTTGCACTCGATTAAGCATAGCAGCAACAAGAGGTACACGTGCCACATGTGTTCTTACACTAGTCGTTCCAAATATCATTTTGAAATGCATGTGCGCGCGCACGAAGGTTCAACGGCCTATAAGTGCAAAATTTGCAACAAGGCATTTACTGTAAGCACTCATGCGTTAGAGCACAAAAATATTCACACTGGCGAAAAGCCTTTTCAGTGCGACATCTGCGGAAAGAGCTTTACTTTCTCTTGGTTTTTGACGTCTCATCGCAGGACTCAGCACTGGGAAATTATCACGGGGATGCCACTCGTTAAGAAAGAGCAACTAAAGGAACACGAACGAGTACACACCGGCGAAAAACCTTACATATGTAAACAGTGCGGTAAAGGCTTCACGCAACGGTCTCCGCTGAGAATACACCAAAGGACGCATACCGGAGAACGACCGTTCGTGCATTTGACACCGATAATCTCGCTTAGGTCACCGCCAAAACGAAGGGGTCGTCCCAAAAAACGGATCTCGTCCAACACCTTACCGAGAATGATAACAATTAAAGAGGAGCGTTTATCGGACGATGAAAACGATGCGGATCTCAAATTCGTCTGTCATATATGCAAAACCGATAAAAAAATGTCGGAATCGCAGTTGCGCGTGCATTTCCGCGAGGACCACAAAGGAAAGAGACTCAGGACTTTGAAGTTGCACGTCGAGAACGCCGTCCGTTGCGATATTTGTCCGAAAGCCTTTCGTACTGTGAAAAGTTTGAAGGAGCACGTGGAGACGCACAGCAATCAGTTCAATTGCGAAACGTGCAACgcgcattttaagaaaatgctCGATTACACTCTTCATTTAAGATTACATTCCGAAGAGAATTTATTCAAATGCATCTTATGCGAGTTTAAGACTGATTCGATTAACGATATTACTGATCATTTGAACAACGCTCACGATCAGAAGTATCAGTTTAAATGTGATAAATGCGGCAGAAGATTCCCTGTCGAGTCCTGGTACCTGGAGCACGAAAACTACCATTCGGGAAAAAATCCGTTTGAATGCGAGTTATGTGGAAAATCGTTTCCTTATACGCGATACTTGCTGGCACATCGCAACACTATGCACAAACACGATTTTGTGGCCACCGCTACTTTGCACGAGTGCGTCATCTGCAAAAAGCAATATCAGCATAAGAATAGCTTGAAGTTGCATATGAATATGCACACCGGGAATGTGTCGGTATGCGATGTGTGCGGAAGAACTCTTTCTAGCAAGGAGAAATTGAAGTTTCACATGCGCACACACACCGGGTACAAACCATTCAGCTGTTCATACTGCGGCAAGAGCTTTACGAAGAAACCGATTTTGGTAGAGCACGAGCGTATTCACACTGGAGAAAAACCGTATGGTTGCGACTTCTGTTCGCGGGCATTTTCTCAACGATCCAGTTTGGTGATACACATGCGAGGTCATACTGGCGAGCGTCCTTACGTCTGTCACATGTGCAACAAGGGTTTCGTTGCACGGGCTATGTTAAATATTCATTTCAAAACGTGCAAAGGATACTCTTCTTAA
- Protein Sequence
- MHTKYFDATPDAFMCKLCGQHLPSKQKVLCHINTSHLHVSTFLCDVCGKCFLKEHSLRVHVLTHSDAKPFECQICSKTFKHQCSLKVHLSTHNDQCRFICEECGKIFKKKSTLVDHKKHHDGDFRFQCDICNKKFVSKSAQNKHMKSHTFADALCLDEGSILRRLIIGPSMTVTVANPSTITRDVPEFKFSPESPPLKIRIKLENENVFLEESFGDDNAPKPVEETNERVHCDVCDVTFKNGISFALHSIKHSSNKRYTCHMCSYTSRSKYHFEMHVRAHEGSTAYKCKICNKAFTVSTHALEHKNIHTGEKPFQCDICGKSFTFSWFLTSHRRTQHWEIITGMPLVKKEQLKEHERVHTGEKPYICKQCGKGFTQRSPLRIHQRTHTGERPFVHLTPIISLRSPPKRRGRPKKRISSNTLPRMITIKEERLSDDENDADLKFVCHICKTDKKMSESQLRVHFREDHKGKRLRTLKLHVENAVRCDICPKAFRTVKSLKEHVETHSNQFNCETCNAHFKKMLDYTLHLRLHSEENLFKCILCEFKTDSINDITDHLNNAHDQKYQFKCDKCGRRFPVESWYLEHENYHSGKNPFECELCGKSFPYTRYLLAHRNTMHKHDFVATATLHECVICKKQYQHKNSLKLHMNMHTGNVSVCDVCGRTLSSKEKLKFHMRTHTGYKPFSCSYCGKSFTKKPILVEHERIHTGEKPYGCDFCSRAFSQRSSLVIHMRGHTGERPYVCHMCNKGFVARAMLNIHFKTCKGYSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -