Acer073680.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Abscondita cerata
Gene Symbol
-
Assembly
GCA_030710515.1
Location
JALBCR010002831.1:100160-112694[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.7e-06 0.00059 22.4 1.3 1 23 292 314 292 314 0.99
2 12 8.7e-06 0.003 20.2 7.1 1 23 320 342 320 342 0.98
3 12 3.7e-06 0.0013 21.4 0.8 1 23 348 370 348 370 0.99
4 12 0.033 11 9.0 3.2 1 23 376 398 376 398 0.95
5 12 0.0004 0.14 15.0 0.5 1 23 404 426 404 426 0.97
6 12 1e-08 3.5e-06 29.4 3.5 1 23 432 454 432 454 0.99
7 12 8.5e-07 0.00029 23.4 1.4 2 23 460 481 459 481 0.97
8 12 1.3e-06 0.00045 22.8 2.8 1 23 487 509 487 509 0.99
9 12 2.7e-06 0.00092 21.8 0.7 1 23 514 536 514 536 0.97
10 12 1.8e-06 0.00063 22.3 4.0 2 23 543 564 542 564 0.98
11 12 4.3e-08 1.5e-05 27.5 1.8 1 23 570 592 570 592 0.99
12 12 9.2e-06 0.0032 20.1 3.3 1 23 598 620 598 620 0.98

Sequence Information

Coding Sequence
ATGTCAGACCAATTAGTTTTCCACGAAAGAAATAGTCCTCATGGACTCGCAATGGATAACATTTTTCACGTTGCAGACTGCTGTCGTGCCTGTTTACGAATTGAATGTTCTTTGACTCCTACAACAACTCCTGATAATGattctattaaattttgtgacaaGCTGATTGCTTGTGTATCTGAAGTAATGTGGATGAAAGAGGGGCTTCCATCGTTAATATGTACAACATGTATAGAAAGGCTACGAGTAGCATACGATTTCCGAAGCGTATGCTTGCAATCGGATAACACTTTGCACAGGTATATAAGTCATCTTCAAGACGAAGCCAAACAGACTATTAACGGTCAACGCCCACTTGCTACGCCAACCAAGTTCGATTTTGGCATTCCCAACAGCACAAGCGATAATTTGCCCTGCATAATTGAAGAACCTCAAAATGCAGAATATTTGCatctgaaacattttttagataACGACGAGGAACTTACAAAATCGGAAAATCTCGTAGACACAACTTCGCGTAGCACGAGCCCCGAATCTAATACAGTTACTGTACATTTCGTCAATAATAATCATCAACCGTTGCAAGATGCTGGGCATCTTCAACAGTCTCAACCCGAACAACAGATACATCACCATCACCATCCACACCATCAGCAACAAGATGAAACTTACGATAGGTTAGATAGGTCCCTAATGCAAATTCAAGAAGAACAACAACAGCAGCAtcagcaacaacaacaacaacaacaattggAAGAGCAACATTCAACCCAATTTAAACCTCCTAGGCAAGTTATAAAACGTACTACGGGTATTCAAGTACGACCACCAACTCCTTCTACATTACAAGAAGGAAGTGACGTAAAGCCTTTTACGTGCACGGTATGCGCGAAGAACTATAGAAAAAATGCGAATTTACGGATACACATGAGAACGCACACAGGAGAAAAACCCTTCGAGTGCCGGTACTGCGAAAAAAGATTTTATCATTCTTCGCATTTGCGTGAACACATTCGCAGACACACGGGAGAAAAACCTTTTCAGTGCGCTGTATGCAATAAACGTTTTACGATTAAGGGCGAATTAACTATGCATATGAAATCACATACGGGTGAAAAACCATACGCGTGTACTTGTTGCGATCGTCGTTGTTTGACCGCCGCGGACCTTAAAGTGCATATGAGGACTCACACTGGAGAAAAGCCGTTCGCGTGCGTGACTTGCGGGAAAAAATTTGCCAGTACCTATATATTAAATTCTCACATTAAAACTCACACGGGCGAAAGACCATATTCTTGTTCAGTATGCGATAAAACTTTTACACAATCATCACATTTAAACGTACATATGCGTAAACACACCGGTGAAAAAGTCAGTTGTAAAATATGTGATGCGAAATTTACTCATTCGTCCCAATTGACTGTTCATATGCGTGAACACACTGGGAAACAACCGTACAAGTGCACCATGTGCGATAAAGTGTGTAATTACGCGTCGGAGTTGCAAACTCACATGATGAAACACACGGGGGAAAAATTTGCGTGCGTTACTTgtgataaaaaatttactacTGCAGCTTATTTGCAAGAACATACCCGCACGCATACAGGTGAGAATCTTTCCACGTGCAGCATATGTGATCGACAGTTTACTAGACATCAGTATTTGGAGAAGCACATGCGAACTCATACCGGAGAAAAACCGTACACGTGCTTCACATGCGGGAAAAAATTTACCCAATCATCGTCGTTGAAAGTTCATATACGAATACATACAGGTGAAAAACCATATCACTGCCAGATATGCGATAGAAGATTTACAACATCTTCGGATTTATCTGCGCATAATAAGAAACACAAAGAAGtacattaa
Protein Sequence
MSDQLVFHERNSPHGLAMDNIFHVADCCRACLRIECSLTPTTTPDNDSIKFCDKLIACVSEVMWMKEGLPSLICTTCIERLRVAYDFRSVCLQSDNTLHRYISHLQDEAKQTINGQRPLATPTKFDFGIPNSTSDNLPCIIEEPQNAEYLHLKHFLDNDEELTKSENLVDTTSRSTSPESNTVTVHFVNNNHQPLQDAGHLQQSQPEQQIHHHHHPHHQQQDETYDRLDRSLMQIQEEQQQQHQQQQQQQQLEEQHSTQFKPPRQVIKRTTGIQVRPPTPSTLQEGSDVKPFTCTVCAKNYRKNANLRIHMRTHTGEKPFECRYCEKRFYHSSHLREHIRRHTGEKPFQCAVCNKRFTIKGELTMHMKSHTGEKPYACTCCDRRCLTAADLKVHMRTHTGEKPFACVTCGKKFASTYILNSHIKTHTGERPYSCSVCDKTFTQSSHLNVHMRKHTGEKVSCKICDAKFTHSSQLTVHMREHTGKQPYKCTMCDKVCNYASELQTHMMKHTGEKFACVTCDKKFTTAAYLQEHTRTHTGENLSTCSICDRQFTRHQYLEKHMRTHTGEKPYTCFTCGKKFTQSSSLKVHIRIHTGEKPYHCQICDRRFTTSSDLSAHNKKHKEVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00466620;
90% Identity
iTF_00153749;
80% Identity
-