Acer095360.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Abscondita cerata
Gene Symbol
-
Assembly
GCA_030710515.1
Location
JALBCR010004295.1:241740-243366[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.93 3.2e+02 4.4 0.8 1 23 10 32 10 32 0.92
2 17 4.2e-06 0.0015 21.2 2.8 1 23 38 60 38 60 0.99
3 17 5.1e-05 0.017 17.8 0.4 1 23 66 88 66 88 0.99
4 17 0.00017 0.06 16.1 0.6 1 23 94 116 94 116 0.98
5 17 2.1e-06 0.00073 22.2 2.4 1 23 122 144 122 144 0.99
6 17 9.9e-06 0.0034 20.0 0.2 1 23 150 172 150 172 0.99
7 17 1.5e-06 0.0005 22.7 1.1 1 23 178 200 178 200 0.99
8 17 0.00014 0.048 16.4 1.8 1 23 206 228 206 228 0.98
9 17 2.2e-07 7.7e-05 25.2 0.3 1 23 234 256 234 256 0.99
10 17 1.6e-06 0.00057 22.5 1.6 1 23 262 284 262 284 0.99
11 17 1.1e-06 0.00039 23.0 2.6 1 23 290 312 290 312 0.99
12 17 6.5e-06 0.0022 20.6 0.4 1 23 318 340 318 340 0.99
13 17 0.00019 0.066 16.0 0.1 2 23 350 371 349 371 0.97
14 17 9.7e-05 0.033 16.9 3.7 1 23 377 399 377 399 0.99
15 17 0.00013 0.046 16.5 1.2 1 23 405 427 405 427 0.98
16 17 7e-05 0.024 17.4 5.7 1 23 433 455 433 455 0.99
17 17 0.00027 0.094 15.5 3.0 1 23 461 483 461 483 0.99

Sequence Information

Coding Sequence
ATGCGGACTTTATTCGGTCGTCCTTTGTATGATTGCGGCGTTTGCGGATACAAAACTGCTCTTAAACGAAGATATCTGTTGCACAAGAAGCTTCACGAGgagaacaaattttttaaatgtaaccagTGCGAATATGTGTGCGCCCAGCGTAGTAACTTCAATGTACACATGAGAATACACACTGGTTATAAGCCATACAAATGTGATCAATGTTCTTACTCGACTGTATCAAATTCGGCTTTAATTGTACATAAAAGAATACATACTGGTGAGAAGCCATATTCTTGCAATGTGTGTAGATATACTACAATATCAAAGTCCGCTTTGACTGTGCATAATCGGATCCATACCGGGAGTAAACCGTATCGGTGTAATCAGTGCAGTTATCGCACTGTTACAAAGTCTTCATTGACAGTCCATATGCGAACGCACACCGGAGATCGACCTTACAAGTGCAATTTGTGTCCGTACAGTACAACGGCGAAATCAGCATTGAATGTGCACATTCGCATACACGAGGGGTACAAACCGTTTCAATGCCCTGAGTGTGAGTATCGTTGCACACAGAGAAGCGGCTTGAACGTACATATACGAATACACACTGGTGATAAGCCTTACCATTGCGAGAAGTGTGATTATAGGAGCAGTAATCGTAGCAGCTTAGTCGTACACGAAAGAATACATTCGGGGGAAACTCCTTATAAGTGTCCCGAATGCGAATATAGCACCGCTTCGAAATCATCGCTGAATGTACACATGCGAATTCATGGTGACAACAAGCCCTTTAGATGCGTTGAGTGTGGTTATAAGTGTGCACAGAGAAGCGGACTGACTGTGCATATGCGAACGCATACTGGAGATAGGCCCTACCAATGTTCATTGTGTGACTACCGTTGTAGCTATCAAGGCAATCTAAAAGTTCATATGCGCGTTCACACAGGAGAAACGCCTTATCGGTGTTTTGTTTGCGGCTACAGTACTACGTCCAAGTCGGCGTTGGTTGTCCACACCCGAATTCACACAGGGGAAAAGCCGTACCATTGCACCGAATGTCCCATTTGTACATATAAAACAACAGCAAACTCCGCATTGGTTGTCCACATGCGAATACACACTGGAGAAAAACCTTACAAATGCACAGCGTGTTTGTACAAATGCAGCAACAAGAGCAGCCTAAAAGTTCACATGCGTATTCACACGGGGGAAACTCCTTTTAGATGCAAGTTTTGCGAATACAGGACGACGTCTAATTCAGCTTTGGTCGTACACACCCGGATACACACCGGAGATAAACCGTACCAATGCCACGATTGTTCGTATAGATGTAACAACAAGAACAGTTTAAAAGTTCACATCAAAGTACACAGGGGTAGAACACCGTACAAATGCGAAATATGCGCCTACGCTTGTAAGAAGCGATTCGTATTGAAACGACACATGCGAGTGCACAACGTCAAAGAAGATCCCGTTGAAGAACAACTGAAACAAGAACTTATTGAGCTTGACGATGAAGAGGAACCTGTCACTGCTGAAGCTATTCTCGATGGATAA
Protein Sequence
MRTLFGRPLYDCGVCGYKTALKRRYLLHKKLHEENKFFKCNQCEYVCAQRSNFNVHMRIHTGYKPYKCDQCSYSTVSNSALIVHKRIHTGEKPYSCNVCRYTTISKSALTVHNRIHTGSKPYRCNQCSYRTVTKSSLTVHMRTHTGDRPYKCNLCPYSTTAKSALNVHIRIHEGYKPFQCPECEYRCTQRSGLNVHIRIHTGDKPYHCEKCDYRSSNRSSLVVHERIHSGETPYKCPECEYSTASKSSLNVHMRIHGDNKPFRCVECGYKCAQRSGLTVHMRTHTGDRPYQCSLCDYRCSYQGNLKVHMRVHTGETPYRCFVCGYSTTSKSALVVHTRIHTGEKPYHCTECPICTYKTTANSALVVHMRIHTGEKPYKCTACLYKCSNKSSLKVHMRIHTGETPFRCKFCEYRTTSNSALVVHTRIHTGDKPYQCHDCSYRCNNKNSLKVHIKVHRGRTPYKCEICAYACKKRFVLKRHMRVHNVKEDPVEEQLKQELIELDDEEEPVTAEAILDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-