Acer057819.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- cheC
- Assembly
- GCA_030710515.1
- Location
- JALBCR010002283.1:273095-275057[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-06 0.0004 22.4 0.0 7 36 21 50 17 54 0.90
Sequence Information
- Coding Sequence
- aTGGTCAGGAGGTATCAAAGAAAGACCCAACGACAGAGCTGGACCATTGAACAACGTAATAATGCTTTGGCTGCTATAGATTCAGGTGTTAAAATACGCGAGGCTGCAAGAAATTTCGGCATTCCAGAATCAACACTGCGCCACCATCGAAAGCCTTCAGGTTTGGCAGAACCCGGGTCAGAAGTTGACCGCTTGGGAAGGAAACCTATTTTTACGAAACCACAAGAAGAGGAGTTAGCAAATCATGTCATGAAGTTGGCAAATTTGTTTTATGGCGTAACTCCACGAGAATTGAGAAGAATAGCATTTTCCTTCACAGAAGCTAATCACCTACGTCATAATTTCAACAAGAAATCTAAGCTAGCCGGCAAAGATTGGCTGTCTTGTTTTATAAAGAGAAATCCCCAACTGACACTTCGACAACCAGAAGGTACAAGTTTGAACCGCATATCCTCATTTAATGCTGAAGCTGttggaatttttttcaaaaacctagAAAATGTGTTGATCAAGTATAAATTTCAGAGTAATCGAATCTTTAATGTCGACGAATCTGGTATAACAGCTGTCCAGAAAAAATCTGGAAAAGTTTATGCAAAAAGGGCAGAAACAAAAAGCTCTTTTGCTGTGTATGATTCTCATATGATTTCGACTGCACACGAAAGGATTACTGTATATGACGTGGCTCGTTTATTTAATCAAGCATACATGAAGGCGGCAACTATGGAAAAGGGTGTATCAGGATTCAAAGCTGCTGGGATATTCCCTTTCAACCCAGCCAAGTTTACTGAAGAGGATTTTGCAGCAGCCGAAGAGTTTCGAGAACTTGTCTTGGACCCAGAGGAACGGGAGAGATGCTTTAATCCAACTTCTCCACAGACAGCGTCAACATCTATAGATGCTTTGAAAGCAAAACCTTTAACCTCTACAGTTGCTCCGGAGTCGGCTTCATCCTCGGCTCCATCAACGTCTGTAATTATTCGAGAACCTACACCATCGACATCCAAAGCAAATTTATCATCATGTTCGGGTGTTAAAATATCAGAACTTGCACCGATTCCGAAGAAGGTAGTTAAGGCAGCaaccaaaagaaaaacatcAACGAAGCAACAATCCGAAATTTGGACTTCCACGCCAATGAAGGCTACTCTCGTGGAAAAAGAAGATAAGCgaaatcagaaaaatcaaaaacaagacaAAAATCTCAAGCGAAAAATGAGTGGTGGTATAAAGGTACAGAAAAGCagaacgaaaataaaatacattaaagaaGACTCGTCGGATGATAATTCTGATTCATCCTTCCAAGTAGACCTCACTGATGACAACAACTCGGACTACAACGAATTTGCACTTCATGAAGAGCCTCCTGTAGCCAACGAAATATGTGTCATATGTGGTGAATTTGGAAAGGATAGGGAGCTTTGGTTTCGTTGCATAAAATGTGCAATATGGGTCCATTCAGAATGTTCCGGTTGGGAATCAGCTGCAGGATACACATGCGATGATTGTCGACTTAGCGTGGGCGCCGATCAAAAAAAAGAGGAATCAAAACGtcgtttattttag
- Protein Sequence
- MVRRYQRKTQRQSWTIEQRNNALAAIDSGVKIREAARNFGIPESTLRHHRKPSGLAEPGSEVDRLGRKPIFTKPQEEELANHVMKLANLFYGVTPRELRRIAFSFTEANHLRHNFNKKSKLAGKDWLSCFIKRNPQLTLRQPEGTSLNRISSFNAEAVGIFFKNLENVLIKYKFQSNRIFNVDESGITAVQKKSGKVYAKRAETKSSFAVYDSHMISTAHERITVYDVARLFNQAYMKAATMEKGVSGFKAAGIFPFNPAKFTEEDFAAAEEFRELVLDPEERERCFNPTSPQTASTSIDALKAKPLTSTVAPESASSSAPSTSVIIREPTPSTSKANLSSCSGVKISELAPIPKKVVKAATKRKTSTKQQSEIWTSTPMKATLVEKEDKRNQKNQKQDKNLKRKMSGGIKVQKSRTKIKYIKEDSSDDNSDSSFQVDLTDDNNSDYNEFALHEEPPVANEICVICGEFGKDRELWFRCIKCAIWVHSECSGWESAAGYTCDDCRLSVGADQKKEESKRRLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -