Acer017391.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- -
- Assembly
- GCA_030710515.1
- Location
- JALBCR010000420.1:197007-197366[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-07 0.00012 24.1 0.0 5 40 1 36 1 39 0.88
Sequence Information
- Coding Sequence
- ATGCTTGCAGCTGTTACTGcggttaaaaataaagaaatgggaTACTTGCTAGCTTCAAGAACTTTTAAAGTACCCAAGAGCACGTTGGAAGACtacgtaaaaaacaaaataaagtcacCTGAAGAGCTTATTCAAACCAATCTAGGACGTCCACCAGTGTTGCCTAAAGAAATTGAAGCGGATTTGGTTGATTATTGTCTAGAAATGGATAAAAGATTTTACGGATTGCGAGCTTCTGATATTCGAAGATTAGCCTTTCAATTAGCCATTcggaacaatttaaaacataggTTTTCAAAGAATCAGGAAAGAGCAGGTTACAAATGGTTGCGTTCGTTTTTAAAAGGCACCCTGAACTAA
- Protein Sequence
- MLAAVTAVKNKEMGYLLASRTFKVPKSTLEDYVKNKIKSPEELIQTNLGRPPVLPKEIEADLVDYCLEMDKRFYGLRASDIRRLAFQLAIRNNLKHRFSKNQERAGYKWLRSFLKGTLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00002487;
- 90% Identity
- iTF_00002457;
- 80% Identity
- iTF_00002501;