Acer048454.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- -
- Assembly
- GCA_030710515.1
- Location
- JALBCR010001892.1:97456-97881[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.8e-07 8.8e-05 24.5 0.0 1 36 18 54 18 61 0.90
Sequence Information
- Coding Sequence
- ATGCCACGACAATACAAACGAAAATTGGGTGCACGAAGATATGCAGATTATGATCCAGCAACATTAGAAGAAGCACTACAGAAAGTAGCTGAAGATGGATGGTCATTACGTCGTGCATcagctgaatttaaaattccttttggtactatcagaaataaatttaatggtttacGCAACAGAAAAACAGGAGGACAAAAGGTTTTCtctgaaaatgaagaaaaagccTTCATCAGGCATGCCAGTTTGTGTGGAGAATGGGGATTTCCCTTAACTGTTTTAGATATAAGAAATATAGCAAACAACTATTTAGATAGCAAAGGCCGCACCATAACGAAATTCAAGGAAAATATGCCAGGTAAAGATTGGGTTTATGGTTTACTGGAGCGCCACAAAAATGAAATCAGCCAAAACTTGCCacgaatataa
- Protein Sequence
- MPRQYKRKLGARRYADYDPATLEEALQKVAEDGWSLRRASAEFKIPFGTIRNKFNGLRNRKTGGQKVFSENEEKAFIRHASLCGEWGFPLTVLDIRNIANNYLDSKGRTITKFKENMPGKDWVYGLLERHKNEISQNLPRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00002497;
- 90% Identity
- iTF_00002474; iTF_00002498; iTF_00002497;
- 80% Identity
- iTF_00002498;