Acer012458.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- cbh2
- Assembly
- GCA_030710515.1
- Location
- JALBCR010000288.1:338809-340626[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.4e-07 4.5e-05 25.4 0.0 1 37 12 48 12 53 0.94
Sequence Information
- Coding Sequence
- ATGCcgttgaaaaacataaaagagCAAACGTGGAAGGAAGAAGACATGAGGAATGCTGTCGAAGCAGTGCGATCTCATAGAATGGGTTATTTAAAAGCTTCCAAATTGTTCAAAGTGCCTCGAGCTACTTTATTTAGATATTATGGAAAAGCAATTTTTGGTTTAACGAGGAGAGATCTACGTACTCTGGCATTTCAATTAGCGAGGCGAAATAATGTTCCGAATAAGTTCTCCTTACTTAAGGAATCTGCGGGAAAAAAATGGCTCAAAGGATTTCTGAGAAGACACGGCGATAAAATTAGCGTGAGAAGACCGACAGGCACATCAGTTGTACGAGCTGCTGGCTTCAATAAGCAAAGTGTTGATGAGTTCTTTGACTTGCTTGAAGCAGTTATGGACGATAAACAGTTTTCTCCCAAACAGATCTTTAACGTGGATGAGTGTGGCATATGCATTGTCCAATCCAAATGTCCCCAAATCTTGGCACTCAAAGGTAAACGTCAGATAGGAGCATTGACGTCTACAGAGCGGGGATCTTTAATCACTGTATGCATGTGTATGAGTGCAGATGGAGTATTTGTGCCACCAATGATCATATTTCCCCGAAAAAATTCTAATGAGCAATTGAAGAAGGGTGCTCCACCTGGAACTCTATTTAAATTCCATCCATCTGGGTGGATCCAAATGGATCTCTTTACTGCTTGGTTCGAGCATTTCATTGAATATGTTCGGCCTTCTCAAACTAACCCAGTCCTGTTAATACTGGATGGTCATAACACACATACGAGAAACCTAGACGTTATTGTGAaggcaaaagaaaattttgtcactATCCTAGCTCTACCTCCACACACCTCCCATAAAATGCAACCGCTCGATAAAACGGTCATGGGAGCATTGAAGACGTTTTATAATGAGGAAATAAGAATTTTCTTGAGAAATAATCAACGTGCTGTCTCTCACTTCGACATCTCTGAACTCTTTGGGAGAGCCTACTTGAAGGTTCAATCAGCTGAACGAGCCGTCAAAGGGTTTGCAACCACGGGAATCTATCCGACaaagagaaatattttcaacgaaGAAGATTTCATAGCTAGTGAGAATCAAGAGGTGGTTCATCAGGCTTCTCCTGTACCTCAAGCATTACACAATGTCATCACTTCAGAAGAAGAAAACGAATGCGAAAATGAACAAGCATCATTGGTGGTTTGTCCAGAAGATATCACACCAATACccaaattacaaagaaaagtgGGTACCCGAGGAAGAAAGCCAGGAAAAGCCAAAATAATAACTTCAACTCCTAACAAAGAGGAGCTTGAAGAATCTGCCAGGGTATTTCCCGAAAATCCAGGTTGCAGTTCAGCTCAGAAATTGGATCAGAAGACAAAGAAGAGgcttattaaacaaaacaagaaagaacTGTCCTCGTCAGACTCAGAATCCGAATCGAGCATTTCAGTTCACAATTCTTCGTCAGatgaaaacgaattttttccGGAATCATCCAATCCCAATGAAGATGCTGAGTGTATTTTCTGTGGTGAAAAGTTTTCGTGCAACAATCGAGGGGAAATATGGATTATGTGCGTATTGTGCAATTGTTGGGCACATGAAGAGTGCGCAGGTGCAGATAAAGACCCATATGTCTGTGACTTTTGTCGATAA
- Protein Sequence
- MPLKNIKEQTWKEEDMRNAVEAVRSHRMGYLKASKLFKVPRATLFRYYGKAIFGLTRRDLRTLAFQLARRNNVPNKFSLLKESAGKKWLKGFLRRHGDKISVRRPTGTSVVRAAGFNKQSVDEFFDLLEAVMDDKQFSPKQIFNVDECGICIVQSKCPQILALKGKRQIGALTSTERGSLITVCMCMSADGVFVPPMIIFPRKNSNEQLKKGAPPGTLFKFHPSGWIQMDLFTAWFEHFIEYVRPSQTNPVLLILDGHNTHTRNLDVIVKAKENFVTILALPPHTSHKMQPLDKTVMGALKTFYNEEIRIFLRNNQRAVSHFDISELFGRAYLKVQSAERAVKGFATTGIYPTKRNIFNEEDFIASENQEVVHQASPVPQALHNVITSEEENECENEQASLVVCPEDITPIPKLQRKVGTRGRKPGKAKIITSTPNKEELEESARVFPENPGCSSAQKLDQKTKKRLIKQNKKELSSSDSESESSISVHNSSSDENEFFPESSNPNEDAECIFCGEKFSCNNRGEIWIMCVLCNCWAHEECAGADKDPYVCDFCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00002343; iTF_00002336; iTF_00002409; iTF_00002346; iTF_00002329;
- 90% Identity
- -
- 80% Identity
- -