Acer043411.2
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- JRKL
- Assembly
- GCA_030710515.1
- Location
- JALBCR010001500.1:191076-192809[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-08 2e-06 29.8 0.2 3 35 16 47 14 54 0.90
Sequence Information
- Coding Sequence
- ATGCCTCGTAGTAAAGAAGGGAAAAAAAGGCCAACTCCTGGCAAAGAACGCATGGAGGCAGCCGTTCGTGATGTCATAAGTGGGCTTTCGTTGCGCTTGGCAGCTTCGAAATATGGAATCAGTAAGTCGGCAATCGCTCGAAGCGTAAACTTGGCCAAAATGAATGATGGGAAGGAATATTCATACGACCCAAAATACGATCAATGTGCAAAACTTCATTACGGTTTAACTCTGCTGGAAGTGAGAAGATTTGCATATCAATATGCAAAGGCTAACAGTAAAGCAGTTCCACAAtgggaagaaaacaaaattgcagGATGGGGGTGGATGCGGTACTTTCGAGACAGACACCCTGACCTAACACTTCGAAAGCCGGAAGCAACGAGCCTTGCAAGGTCGACAGCCTTTAATAAGACCACAGTCAGTGAATTCTTCAACAATTATGAGAAGGTGTTGGAAAAGTACAACTTTTCTTTGCAGCCACAGCAAATTTGGAATACAGATGAAACGGGCCTGTCCACGGTGCATATTCCTCCTAAAATCCTTGCCCAAAGGGAAAGCAAACAAGTAGGTGGCATGACCTCAGGTGAACGGGGCCAAAATGTGACGATGATCGCTGCCATTAATGCTATAGGAAATAGTATCCCGCCATTATTCATCTTTCCTAGGGTTCATCTGAAAACTCACATGTTAAAGGGAGCTCCTCCAGGCTCAtttttagaacattttataaaacatgcaAAACCAAGCACTGAAGAACctcatttgcttattttagatAACCACAAGACCCACATCTCTATTAACGGCGTACAAAAGGCTAAGGATGCAGGAGTAATTTTGCTAACAATTCCGCCTCATACAAGCCATAAACTGCAGCCCCTAGACCGTACAGTTTATGGCCCATTCAAACTTTATTATAATCGTGCTATGAATGAATGGATGAGCACTCCTGGTAATGCTGGTAAAGTTATTACTATTTATGATGTCTGTGAGAGCACTGGTATTGTTCCACTGAACAGAAATATATTTGATGACAGTGACTTTATTGCTTCAAATGTTACTGATAGACCGCATGAAATCGAAAATCCGGAAAATCTATCTGAAGCATTGACTAAGCCAGCAAAAGACATAACCAATCCAACGAGCTGTCAAGACCAACCTTCCACAAGTGGGGTAAATTTGAACGCGAATGCAGAAGCTACTCCATCAACAGTTCATTCTGAATCAAGTCCATCTGTGAAGGTGACACCTATAATGTTGAAACCATTCCCAAAGGTGacagagaaaagaaaatgtactgGAAGAAAAAGGGGAAAGTCCACTATCCTCACGGATACACCAGAGAAATTGGAACTAGAGATGAGAAAGCAGCCAAAGTCGAAGGCGCCCGCAGCAAAAGTAGCAAAGATAAAACGTAAAATAGTAGAAAGTAGTAGCGACGAGGAAGGTGACTGTGATGCACCTGTTGGGTCCGATGACGATTTTGACCTTCATAATGAAGCCACTACTATAGAACTGGAGAGGCAATTTGAATCAGAAGAACTTAAGGCTGAGACTATATTCTCATAA
- Protein Sequence
- MPRSKEGKKRPTPGKERMEAAVRDVISGLSLRLAASKYGISKSAIARSVNLAKMNDGKEYSYDPKYDQCAKLHYGLTLLEVRRFAYQYAKANSKAVPQWEENKIAGWGWMRYFRDRHPDLTLRKPEATSLARSTAFNKTTVSEFFNNYEKVLEKYNFSLQPQQIWNTDETGLSTVHIPPKILAQRESKQVGGMTSGERGQNVTMIAAINAIGNSIPPLFIFPRVHLKTHMLKGAPPGSFLEHFIKHAKPSTEEPHLLILDNHKTHISINGVQKAKDAGVILLTIPPHTSHKLQPLDRTVYGPFKLYYNRAMNEWMSTPGNAGKVITIYDVCESTGIVPLNRNIFDDSDFIASNVTDRPHEIENPENLSEALTKPAKDITNPTSCQDQPSTSGVNLNANAEATPSTVHSESSPSVKVTPIMLKPFPKVTEKRKCTGRKRGKSTILTDTPEKLELEMRKQPKSKAPAAKVAKIKRKIVESSSDEEGDCDAPVGSDDDFDLHNEATTIELERQFESEELKAETIFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01240518;
- 90% Identity
- -
- 80% Identity
- -