Acer073221.1
Basic Information
- Insect
- Abscondita cerata
- Gene Symbol
- -
- Assembly
- GCA_030710515.1
- Location
- JALBCR010002796.1:37931-39805[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-09 3.3e-07 32.2 0.0 2 35 16 49 15 57 0.88
Sequence Information
- Coding Sequence
- ATGTCTAATTCAAGTAAAACTAAAACACATAGTCAAAAATACACGGAAGCTGATGTACAGAAAGCCCTTACAGCAATTAAAAATGGAACGAGCCAGAGAAAAGCAGCCCAACAGTTTAATGTTCCGAGAGCTACTCTACAGTTTAGGACAAGTGAAAATTTTCACGATAAAACCACTCGTGGTCCAACTCCTATTCTTTCGTTGGACGAGGAAACTCGACTTAAAGACTGGATTTGTGCATGTCAGAAAAAGGTTTTCCTTGACATTCTTAAAGATCcatcacgtatttttaatggcGATGAAACGTGTTTTTATCTATGCCCGAAAAATAAAAGAGTGTTAGCTGTAAGGGGAAGCAATAATGTTTACGAAATTGAACATCACTCGAAAGTTAATTTAACAGTTATGTTTACGTTTGCAGCCTCTGGCGATCTTACACCGCCCATGGTAATTTATCCTTATAAGAAATTGCCATCAGACATTGTAAAGTCGGTACCTGCTGGATGGGGAATAGCCCGCGGACGTTGCGGCGTTCAAACCCTTAAAATTGGTTGGAACAAAGCAGTTTTGAACTTCAGAAGGGAAAATCCAAATTCTGTGGTAACCAAGGAAAACTTTGCCTTAGTATTGAACAGTGCCATAAGTTCGTTAACGTCAGtttctataatcaatggttttaaagCAACTGGGTTATATCCTTGGAACCCGTCAGCAATTGATTATTCCAAATGTTTGGGAAAGAACACCAGCAAAATCAAAGAAACCGTTTCTGAAGAAGACTCCATAATCTATGCCGAGTTTAAGAAAGTAGTTGGGACTGAAAAGATAAATATGTTCCAAAATAATGGATGTGAAGATCTGAATGAAGatgcacaaattttatataatatactccagttattcaaaaataagtcaGATGATGCaagatctaatttaattaatactaacTCAGATGATCTAACGCGTGATGAATATATTCCGTTTGCCGACAGGGAGAATAATGATCGTGCTGATATTATTGCTTCTTCATCTGATATCCCAGATACTCTAGAACAGTTAACCACAATCGAAATAGAAAATCACGTAACGGACAGTAATAATATATCATCAACTAGGCTTTCTTCATGCAACcgttcaatttcaaattttaagttaaccaCATATAACATAGACAACATtcctattataaatattagttcACCTAATCTTCCCTCCACTTCCTATAATTATTCGTCTCCGACGCAAGTAGAATCACCTTATCGGTCAAATTCTGGACAAAAGGAATTCATAAATGGGCACACCGAGGAGAAATCATCTATTGACAAATTCTTCTTTTGGCCGAAGACTCCAGAACGTAAGGTAAAAAACGGAAAGACTTCCGTTTGTGCTTACATCCTCAGATCGGCAAAACatagaaaaacgtaa
- Protein Sequence
- MSNSSKTKTHSQKYTEADVQKALTAIKNGTSQRKAAQQFNVPRATLQFRTSENFHDKTTRGPTPILSLDEETRLKDWICACQKKVFLDILKDPSRIFNGDETCFYLCPKNKRVLAVRGSNNVYEIEHHSKVNLTVMFTFAASGDLTPPMVIYPYKKLPSDIVKSVPAGWGIARGRCGVQTLKIGWNKAVLNFRRENPNSVVTKENFALVLNSAISSLTSVSIINGFKATGLYPWNPSAIDYSKCLGKNTSKIKETVSEEDSIIYAEFKKVVGTEKINMFQNNGCEDLNEDAQILYNILQLFKNKSDDARSNLINTNSDDLTRDEYIPFADRENNDRADIIASSSDIPDTLEQLTTIEIENHVTDSNNISSTRLSSCNRSISNFKLTTYNIDNIPIINISSPNLPSTSYNYSSPTQVESPYRSNSGQKEFINGHTEEKSSIDKFFFWPKTPERKVKNGKTSVCAYILRSAKHRKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00002196; iTF_00002178; iTF_00002198; iTF_00002174;
- 90% Identity
- iTF_00002196;
- 80% Identity
- -